miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12160 5' -52.7 NC_003309.1 + 37033 0.66 0.868275
Target:  5'- aGuCGCGAUCGccaAGGGCGAggcCGAAGc -3'
miRNA:   3'- cC-GCGCUAGCuc-UUCCGCUa--GCUUCu -5'
12160 5' -52.7 NC_003309.1 + 9640 0.66 0.851664
Target:  5'- cGCGUGA-CGAuccGAAGGCGAUUGcucAGGu -3'
miRNA:   3'- cCGCGCUaGCU---CUUCCGCUAGCu--UCU- -5'
12160 5' -52.7 NC_003309.1 + 48036 0.67 0.825014
Target:  5'- cGGCGUGAa-GAGu-GGCcGGUCGAGGu -3'
miRNA:   3'- -CCGCGCUagCUCuuCCG-CUAGCUUCu -5'
12160 5' -52.7 NC_003309.1 + 5063 0.67 0.796509
Target:  5'- gGGCGCGG-CGGccggugccgcGAcGGCGGUCGGAu- -3'
miRNA:   3'- -CCGCGCUaGCU----------CUuCCGCUAGCUUcu -5'
12160 5' -52.7 NC_003309.1 + 26812 0.7 0.674294
Target:  5'- uGCGCGAuccaguauUCGGucgccucauucucguGAGGaGCGGUCGggGAa -3'
miRNA:   3'- cCGCGCU--------AGCU---------------CUUC-CGCUAGCuuCU- -5'
12160 5' -52.7 NC_003309.1 + 37223 0.7 0.636631
Target:  5'- aGCGCG-UCGAGGacgagguaaAGGCGAacgccgCGAAGGu -3'
miRNA:   3'- cCGCGCuAGCUCU---------UCCGCUa-----GCUUCU- -5'
12160 5' -52.7 NC_003309.1 + 32896 0.7 0.614427
Target:  5'- uGCGCGAcggcaggguucUCGGGAcugcaaauguGGGCGAUCcaGAAGGc -3'
miRNA:   3'- cCGCGCU-----------AGCUCU----------UCCGCUAG--CUUCU- -5'
12160 5' -52.7 NC_003309.1 + 37279 0.82 0.148321
Target:  5'- cGGCGCG-UCGAu--GGCGGUCGAGGAc -3'
miRNA:   3'- -CCGCGCuAGCUcuuCCGCUAGCUUCU- -5'
12160 5' -52.7 NC_003309.1 + 36547 1.12 0.001243
Target:  5'- cGGCGCGAUCGAGAAGGCGAUCGAAGAa -3'
miRNA:   3'- -CCGCGCUAGCUCUUCCGCUAGCUUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.