miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12161 5' -58.2 NC_003309.1 + 23972 0.65 0.591918
Target:  5'- -cGcCGCGACGaucggugcCCCUGAAUacgucaacuugaUCGCUGGa -3'
miRNA:   3'- caC-GCGCUGC--------GGGACUUAg-----------AGCGGCC- -5'
12161 5' -58.2 NC_003309.1 + 21895 0.66 0.541126
Target:  5'- -cGUGaCGAUGCCgaUUGGAUCUgGCCGc -3'
miRNA:   3'- caCGC-GCUGCGG--GACUUAGAgCGGCc -5'
12161 5' -58.2 NC_003309.1 + 27385 0.66 0.541126
Target:  5'- uGUG-GCGaACGCCac---UCUCGCCGGc -3'
miRNA:   3'- -CACgCGC-UGCGGgacuuAGAGCGGCC- -5'
12161 5' -58.2 NC_003309.1 + 16079 0.67 0.530714
Target:  5'- uGUGC-CGACGCCCccggaugcgaaUGcacgagagcgacGAUCUCGCCa- -3'
miRNA:   3'- -CACGcGCUGCGGG-----------AC------------UUAGAGCGGcc -5'
12161 5' -58.2 NC_003309.1 + 13809 0.67 0.527604
Target:  5'- uGUGUGCGACGCgguuguugucgccgCCgcu-UC-CGCCGGg -3'
miRNA:   3'- -CACGCGCUGCG--------------GGacuuAGaGCGGCC- -5'
12161 5' -58.2 NC_003309.1 + 34377 0.67 0.479878
Target:  5'- -aGCGCGAgGUCaaGGAaCUgCGCCGGa -3'
miRNA:   3'- caCGCGCUgCGGgaCUUaGA-GCGGCC- -5'
12161 5' -58.2 NC_003309.1 + 11525 0.67 0.479878
Target:  5'- aGUGCuuGCG-CGCCCUucugcgacgcGAggCUCGCCGu -3'
miRNA:   3'- -CACG--CGCuGCGGGA----------CUuaGAGCGGCc -5'
12161 5' -58.2 NC_003309.1 + 22386 0.68 0.425931
Target:  5'- cUGCGCGucgaACGCCCgcgcggccugCUCGUCGGc -3'
miRNA:   3'- cACGCGC----UGCGGGacuua-----GAGCGGCC- -5'
12161 5' -58.2 NC_003309.1 + 22427 0.68 0.422217
Target:  5'- -aGCGCGGCGCgCgaGAUCUUGCCc- -3'
miRNA:   3'- caCGCGCUGCGgGacUUAGAGCGGcc -5'
12161 5' -58.2 NC_003309.1 + 536 0.69 0.413015
Target:  5'- uUGCGcCGACcagGCgCUGccggCUCGCCGGg -3'
miRNA:   3'- cACGC-GCUG---CGgGACuua-GAGCGGCC- -5'
12161 5' -58.2 NC_003309.1 + 16905 0.69 0.374042
Target:  5'- -aGUGCGGCGCCgaGAAUCguguugaagagccCGCCGc -3'
miRNA:   3'- caCGCGCUGCGGgaCUUAGa------------GCGGCc -5'
12161 5' -58.2 NC_003309.1 + 5764 0.7 0.352214
Target:  5'- cGUGCGCGGgGCCaUGAucca-GCCGGg -3'
miRNA:   3'- -CACGCGCUgCGGgACUuagagCGGCC- -5'
12161 5' -58.2 NC_003309.1 + 18748 0.71 0.303883
Target:  5'- -gGCGauaguCGGCGCCUUGucgagcgugaucGUCUCGCCGGc -3'
miRNA:   3'- caCGC-----GCUGCGGGACu-----------UAGAGCGGCC- -5'
12161 5' -58.2 NC_003309.1 + 10824 0.71 0.298032
Target:  5'- -cGCGCGAgGCCgUGAuccGUCUCgGCCa- -3'
miRNA:   3'- caCGCGCUgCGGgACU---UAGAG-CGGcc -5'
12161 5' -58.2 NC_003309.1 + 31696 0.71 0.298032
Target:  5'- -gGCGCGACGaUCgUGAAUCagGCCGa -3'
miRNA:   3'- caCGCGCUGC-GGgACUUAGagCGGCc -5'
12161 5' -58.2 NC_003309.1 + 32950 0.71 0.298032
Target:  5'- -aGCGCGACGaCCCUGAGcugaUCGCgGc -3'
miRNA:   3'- caCGCGCUGC-GGGACUUag--AGCGgCc -5'
12161 5' -58.2 NC_003309.1 + 10684 0.72 0.270085
Target:  5'- cUGCGCGGCGgCC---GUCUCGCgGGc -3'
miRNA:   3'- cACGCGCUGCgGGacuUAGAGCGgCC- -5'
12161 5' -58.2 NC_003309.1 + 18793 0.74 0.204095
Target:  5'- cUGCGCGAUGCCCgacgGcaaGAUCgccgugaaacgaUCGCCGGc -3'
miRNA:   3'- cACGCGCUGCGGGa---C---UUAG------------AGCGGCC- -5'
12161 5' -58.2 NC_003309.1 + 37303 1.09 0.000523
Target:  5'- cGUGCGCGACGCCCUGAAUCUCGCCGGc -3'
miRNA:   3'- -CACGCGCUGCGGGACUUAGAGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.