miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12164 5' -57 NC_003309.1 + 38981 1.08 0.000708
Target:  5'- uGAGCCGGCAGCCGAUACGUCCAUCGAa -3'
miRNA:   3'- -CUCGGCCGUCGGCUAUGCAGGUAGCU- -5'
12164 5' -57 NC_003309.1 + 41274 0.73 0.259007
Target:  5'- -cGCUGGCGGCCGGgcucaggucgagGCGUUCAUCa- -3'
miRNA:   3'- cuCGGCCGUCGGCUa-----------UGCAGGUAGcu -5'
12164 5' -57 NC_003309.1 + 5064 0.72 0.29516
Target:  5'- cGGGCgCGGCGGCCGGUGCcgcgacggCgGUCGGa -3'
miRNA:   3'- -CUCG-GCCGUCGGCUAUGca------GgUAGCU- -5'
12164 5' -57 NC_003309.1 + 7895 0.71 0.349847
Target:  5'- aAGUCGGCaAGCCGAUcgGCGUCggugaaCGUCGGc -3'
miRNA:   3'- cUCGGCCG-UCGGCUA--UGCAG------GUAGCU- -5'
12164 5' -57 NC_003309.1 + 5013 0.7 0.384189
Target:  5'- cAGCCGccGCAGCCGccAUGCGUUCAgCGGc -3'
miRNA:   3'- cUCGGC--CGUCGGC--UAUGCAGGUaGCU- -5'
12164 5' -57 NC_003309.1 + 45256 0.69 0.411371
Target:  5'- -uGCCGGCcGCCGcGUGCG-CC-UCGAa -3'
miRNA:   3'- cuCGGCCGuCGGC-UAUGCaGGuAGCU- -5'
12164 5' -57 NC_003309.1 + 33622 0.69 0.439713
Target:  5'- cAGUCGGCAGCCGggGCGacagCUA-CGAc -3'
miRNA:   3'- cUCGGCCGUCGGCuaUGCa---GGUaGCU- -5'
12164 5' -57 NC_003309.1 + 31513 0.68 0.459214
Target:  5'- -cGCCGGcCAGCCGAcgGCGgccuaCAUUGGg -3'
miRNA:   3'- cuCGGCC-GUCGGCUa-UGCag---GUAGCU- -5'
12164 5' -57 NC_003309.1 + 11984 0.68 0.459214
Target:  5'- -cGCgCGGCAGCCGcgGCGcgcgCCgcGUCGGc -3'
miRNA:   3'- cuCG-GCCGUCGGCuaUGCa---GG--UAGCU- -5'
12164 5' -57 NC_003309.1 + 25904 0.68 0.479166
Target:  5'- uGAGuuGGCGGCagaGAUcCGUCC-UUGAc -3'
miRNA:   3'- -CUCggCCGUCGg--CUAuGCAGGuAGCU- -5'
12164 5' -57 NC_003309.1 + 37636 0.67 0.559479
Target:  5'- cGGCCGGCugcgauaacgucccGGCCGGcUACGUCgGUgUGAa -3'
miRNA:   3'- cUCGGCCG--------------UCGGCU-AUGCAGgUA-GCU- -5'
12164 5' -57 NC_003309.1 + 3953 0.67 0.562697
Target:  5'- -cGUCGGCGcuCCGAUGCGgcagCCAUCu- -3'
miRNA:   3'- cuCGGCCGUc-GGCUAUGCa---GGUAGcu -5'
12164 5' -57 NC_003309.1 + 48024 0.66 0.595113
Target:  5'- uGGCCGGUcgaggucGCCgGAUGCGauUUCGUCGAa -3'
miRNA:   3'- cUCGGCCGu------CGG-CUAUGC--AGGUAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.