miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12165 5' -52.6 NC_003309.1 + 14438 0.66 0.83795
Target:  5'- -gCCGAGGuauuUGCCGUCGAccguCGCCccGAg -3'
miRNA:   3'- gaGGUUCU----GCGGUAGCUu---GCGGuaCU- -5'
12165 5' -52.6 NC_003309.1 + 40472 0.66 0.827909
Target:  5'- -gCCAgaGGACGCCGgaguuggUCGcGACGCaCAUGGc -3'
miRNA:   3'- gaGGU--UCUGCGGU-------AGC-UUGCG-GUACU- -5'
12165 5' -52.6 NC_003309.1 + 15479 0.66 0.819501
Target:  5'- gUUCGGGucCGCCGUCGGAuUGCCGgccgGAa -3'
miRNA:   3'- gAGGUUCu-GCGGUAGCUU-GCGGUa---CU- -5'
12165 5' -52.6 NC_003309.1 + 39016 0.67 0.769983
Target:  5'- -aUCGAGcucAUGCCGUCcGGCGCCAUGc -3'
miRNA:   3'- gaGGUUC---UGCGGUAGcUUGCGGUACu -5'
12165 5' -52.6 NC_003309.1 + 10224 0.67 0.769983
Target:  5'- gCUUCAcGAUGCCGUCGAggugcucugcgACGUaCGUGAu -3'
miRNA:   3'- -GAGGUuCUGCGGUAGCU-----------UGCG-GUACU- -5'
12165 5' -52.6 NC_003309.1 + 22625 0.68 0.759588
Target:  5'- -gCCGGGcACGCCGUCGccaccGGCuGCCGUGc -3'
miRNA:   3'- gaGGUUC-UGCGGUAGC-----UUG-CGGUACu -5'
12165 5' -52.6 NC_003309.1 + 18556 0.68 0.753285
Target:  5'- -aCCGAGacggugcgccuGCGCCugcgacgugcagcCGAACGCCGUGAc -3'
miRNA:   3'- gaGGUUC-----------UGCGGua-----------GCUUGCGGUACU- -5'
12165 5' -52.6 NC_003309.1 + 7811 0.69 0.70582
Target:  5'- --gCGAG-CGCCAugUCGAgcGCGCCAUGu -3'
miRNA:   3'- gagGUUCuGCGGU--AGCU--UGCGGUACu -5'
12165 5' -52.6 NC_003309.1 + 13228 0.69 0.683701
Target:  5'- -aCCGAGAuccCGCCGUUGcGCGCCGg-- -3'
miRNA:   3'- gaGGUUCU---GCGGUAGCuUGCGGUacu -5'
12165 5' -52.6 NC_003309.1 + 39077 1.09 0.001775
Target:  5'- gCUCCAAGACGCCAUCGAACGCCAUGAu -3'
miRNA:   3'- -GAGGUUCUGCGGUAGCUUGCGGUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.