Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12167 | 3' | -48.7 | NC_003309.1 | + | 29586 | 0.66 | 0.975747 |
Target: 5'- -aGCggCGUG-CGGGUcgauuUCAAGAUCa- -3' miRNA: 3'- cgCGaaGCACuGCCUA-----AGUUCUAGcu -5' |
|||||||
12167 | 3' | -48.7 | NC_003309.1 | + | 45946 | 0.72 | 0.789206 |
Target: 5'- cGCGCUUCGgGAucgcCGGAaUCGuGAUCGGc -3' miRNA: 3'- -CGCGAAGCaCU----GCCUaAGUuCUAGCU- -5' |
|||||||
12167 | 3' | -48.7 | NC_003309.1 | + | 39595 | 1.12 | 0.003189 |
Target: 5'- uGCGCUUCGUGACGGAUUCAAGAUCGAa -3' miRNA: 3'- -CGCGAAGCACUGCCUAAGUUCUAGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home