miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12168 3' -63.2 NC_003309.1 + 668 0.66 0.321102
Target:  5'- -aCGCAGGGcgcuugccacgaacGACGUCUCGCGCgaACUUg -3'
miRNA:   3'- ggGCGUCCCa-------------CUGCGGGGCGCG--UGAG- -5'
12168 3' -63.2 NC_003309.1 + 38120 0.67 0.30358
Target:  5'- uCCCGCGGcaau-UGCUCCGCGCGCa- -3'
miRNA:   3'- -GGGCGUCccacuGCGGGGCGCGUGag -5'
12168 3' -63.2 NC_003309.1 + 13274 0.69 0.21057
Target:  5'- gCUCGCAGGGUucGAcgaucCGCCCUcgaucgaaacugGCGCGCUg -3'
miRNA:   3'- -GGGCGUCCCA--CU-----GCGGGG------------CGCGUGAg -5'
12168 3' -63.2 NC_003309.1 + 47658 0.74 0.098672
Target:  5'- aCCGCGGucaGUGACaCCuuGCGCGCUCu -3'
miRNA:   3'- gGGCGUCc--CACUGcGGggCGCGUGAG- -5'
12168 3' -63.2 NC_003309.1 + 41085 1.09 0.000176
Target:  5'- cCCCGCAGGGUGACGCCCCGCGCACUCc -3'
miRNA:   3'- -GGGCGUCCCACUGCGGGGCGCGUGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.