miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12170 3' -49.6 NC_003309.1 + 49402 0.66 0.957339
Target:  5'- cCAACgGCCAUCGcacUCcGGAUGCGCg- -3'
miRNA:   3'- aGUUG-UGGUAGUu--AGuUCUGCGCGgg -5'
12170 3' -49.6 NC_003309.1 + 11280 0.66 0.957339
Target:  5'- gUCGGCACCAUgAcaCuuuGCGCcGCCCg -3'
miRNA:   3'- -AGUUGUGGUAgUuaGuucUGCG-CGGG- -5'
12170 3' -49.6 NC_003309.1 + 45970 0.66 0.953006
Target:  5'- aCGACuugucGCUGUCGcgCAuGACGCGCUUc -3'
miRNA:   3'- aGUUG-----UGGUAGUuaGUuCUGCGCGGG- -5'
12170 3' -49.6 NC_003309.1 + 19443 0.66 0.953006
Target:  5'- gCGGCggaGCCGUCAccCGGGAa-CGCCCa -3'
miRNA:   3'- aGUUG---UGGUAGUuaGUUCUgcGCGGG- -5'
12170 3' -49.6 NC_003309.1 + 10012 0.66 0.948386
Target:  5'- gUCAGCuuucccucuucgGCCAUCGAcUUGAGcUGCGCCg -3'
miRNA:   3'- -AGUUG------------UGGUAGUU-AGUUCuGCGCGGg -5'
12170 3' -49.6 NC_003309.1 + 22660 0.66 0.947908
Target:  5'- gCGGCACCAUCGccCAcgccggcggcgcuGGAaGCGCCg -3'
miRNA:   3'- aGUUGUGGUAGUuaGU-------------UCUgCGCGGg -5'
12170 3' -49.6 NC_003309.1 + 2268 0.66 0.943474
Target:  5'- aUCGACGCgAUCGG-CGAGcauuGCaCGCCCc -3'
miRNA:   3'- -AGUUGUGgUAGUUaGUUC----UGcGCGGG- -5'
12170 3' -49.6 NC_003309.1 + 27809 0.66 0.943474
Target:  5'- --cGCGCCcuuuUCGGaCGAGugGCGUGCCCg -3'
miRNA:   3'- aguUGUGGu---AGUUaGUUC--UGCGCGGG- -5'
12170 3' -49.6 NC_003309.1 + 5396 0.66 0.943474
Target:  5'- gUCAGCACCGaugUAGcCGAcGAuCGCGCCa -3'
miRNA:   3'- -AGUUGUGGUa--GUUaGUU-CU-GCGCGGg -5'
12170 3' -49.6 NC_003309.1 + 50101 0.66 0.943474
Target:  5'- uUC-ACGCCAUCAgcGUCcc-GCGUGUCCc -3'
miRNA:   3'- -AGuUGUGGUAGU--UAGuucUGCGCGGG- -5'
12170 3' -49.6 NC_003309.1 + 45179 0.66 0.938268
Target:  5'- cCGAcCACC-UCGAaugccuUCAcGcACGCGCCCg -3'
miRNA:   3'- aGUU-GUGGuAGUU------AGUuC-UGCGCGGG- -5'
12170 3' -49.6 NC_003309.1 + 14065 0.67 0.932764
Target:  5'- uUCAGCACgGUCAAcUGAGACagaucaccCGCCUg -3'
miRNA:   3'- -AGUUGUGgUAGUUaGUUCUGc-------GCGGG- -5'
12170 3' -49.6 NC_003309.1 + 46263 0.67 0.932764
Target:  5'- gUCAGCGgCAUCGAUCAA----CGCCUg -3'
miRNA:   3'- -AGUUGUgGUAGUUAGUUcugcGCGGG- -5'
12170 3' -49.6 NC_003309.1 + 11867 0.67 0.932197
Target:  5'- aUCAGCGCgagcucgcgCGUCAgauuGUCGAuGuugguucGCGCGCCCg -3'
miRNA:   3'- -AGUUGUG---------GUAGU----UAGUU-C-------UGCGCGGG- -5'
12170 3' -49.6 NC_003309.1 + 40119 0.67 0.925161
Target:  5'- aCAGCGagaaCAUCGGUCGcgcccaugcaaugcGGcACGCgGCCCg -3'
miRNA:   3'- aGUUGUg---GUAGUUAGU--------------UC-UGCG-CGGG- -5'
12170 3' -49.6 NC_003309.1 + 11795 0.67 0.920858
Target:  5'- gCGAuCGCCuuuUCGAgCGAcuuguacgcgucGGCGCGCCCg -3'
miRNA:   3'- aGUU-GUGGu--AGUUaGUU------------CUGCGCGGG- -5'
12170 3' -49.6 NC_003309.1 + 8477 0.67 0.920858
Target:  5'- aUCAGC-CCAUUGAc---GACGCcGCCCa -3'
miRNA:   3'- -AGUUGuGGUAGUUaguuCUGCG-CGGG- -5'
12170 3' -49.6 NC_003309.1 + 43388 0.67 0.920231
Target:  5'- uUCGAC-CCGcacgaccUCGGagugCucGACGCGCCCg -3'
miRNA:   3'- -AGUUGuGGU-------AGUUa---GuuCUGCGCGGG- -5'
12170 3' -49.6 NC_003309.1 + 43526 0.67 0.914456
Target:  5'- gUCGGCgGCCAUCGcgcgcAUCAGGuCGCGgCa -3'
miRNA:   3'- -AGUUG-UGGUAGU-----UAGUUCuGCGCgGg -5'
12170 3' -49.6 NC_003309.1 + 46834 0.67 0.914456
Target:  5'- gCAacGCGCCGUCAgcGUCAGucuuUGCGCCa -3'
miRNA:   3'- aGU--UGUGGUAGU--UAGUUcu--GCGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.