miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12172 3' -58.2 NC_003309.1 + 13436 0.66 0.587172
Target:  5'- -cGCCGCCGugcccuUGUACCGu--CGaCGGCc -3'
miRNA:   3'- gaCGGCGGCu-----GUAUGGCucuGC-GCCG- -5'
12172 3' -58.2 NC_003309.1 + 44788 0.66 0.587172
Target:  5'- -cGuCCaCCGGgAUACCGAGcGCGCgaGGCa -3'
miRNA:   3'- gaC-GGcGGCUgUAUGGCUC-UGCG--CCG- -5'
12172 3' -58.2 NC_003309.1 + 19318 0.66 0.576532
Target:  5'- -cGCCGgaaUCGACGUcacGCCGAGcGCGUuuucGGCg -3'
miRNA:   3'- gaCGGC---GGCUGUA---UGGCUC-UGCG----CCG- -5'
12172 3' -58.2 NC_003309.1 + 48048 0.66 0.576532
Target:  5'- -cGCCGucauuaCCGGCGUGaaGAGugGcCGGUc -3'
miRNA:   3'- gaCGGC------GGCUGUAUggCUCugC-GCCG- -5'
12172 3' -58.2 NC_003309.1 + 6207 0.66 0.559602
Target:  5'- aUGCCGCuCGAUcuugaccacuuucauGUuucucuCCGAuACGCGGCc -3'
miRNA:   3'- gACGGCG-GCUG---------------UAu-----GGCUcUGCGCCG- -5'
12172 3' -58.2 NC_003309.1 + 16760 0.66 0.55539
Target:  5'- -gGCCGCCGucGCGcGCCGAcGucaggaacGCGCGGa -3'
miRNA:   3'- gaCGGCGGC--UGUaUGGCU-C--------UGCGCCg -5'
12172 3' -58.2 NC_003309.1 + 7215 0.66 0.55539
Target:  5'- uUGCgCGCCGGCAguaccGCCGuGAUGUcGUa -3'
miRNA:   3'- gACG-GCGGCUGUa----UGGCuCUGCGcCG- -5'
12172 3' -58.2 NC_003309.1 + 19387 0.66 0.55539
Target:  5'- -cGCCGCggucagCGACAcgACCGAcg-GCGGCg -3'
miRNA:   3'- gaCGGCG------GCUGUa-UGGCUcugCGCCG- -5'
12172 3' -58.2 NC_003309.1 + 16402 0.66 0.55539
Target:  5'- -cGCgGCCGACG--UCGAGAaaacCGGCg -3'
miRNA:   3'- gaCGgCGGCUGUauGGCUCUgc--GCCG- -5'
12172 3' -58.2 NC_003309.1 + 15603 0.66 0.544903
Target:  5'- uCUGCCGCuuCGGCAguugcuggccACCGAaGucgaGCGGCg -3'
miRNA:   3'- -GACGGCG--GCUGUa---------UGGCU-Cug--CGCCG- -5'
12172 3' -58.2 NC_003309.1 + 19829 0.66 0.544903
Target:  5'- --aUCGCCGACugcaacgACC-AGACGcCGGCa -3'
miRNA:   3'- gacGGCGGCUGua-----UGGcUCUGC-GCCG- -5'
12172 3' -58.2 NC_003309.1 + 8322 0.66 0.544903
Target:  5'- uUGCCGUCGACcgAgaauucgcCCGGGuCG-GGCa -3'
miRNA:   3'- gACGGCGGCUGuaU--------GGCUCuGCgCCG- -5'
12172 3' -58.2 NC_003309.1 + 9530 0.67 0.534481
Target:  5'- aCUGCgCGCCG-CGUcgagcgcgcgcACCGuGACcugcacgcuuGCGGCg -3'
miRNA:   3'- -GACG-GCGGCuGUA-----------UGGCuCUG----------CGCCG- -5'
12172 3' -58.2 NC_003309.1 + 4237 0.67 0.52413
Target:  5'- -aGCCGcCCGAgAaaGCCGAGAaguugacgauUGCGGUg -3'
miRNA:   3'- gaCGGC-GGCUgUa-UGGCUCU----------GCGCCG- -5'
12172 3' -58.2 NC_003309.1 + 27193 0.67 0.521039
Target:  5'- gCUGCCGuuGAUucgcgcguguuguagACCGGcGCGcCGGCg -3'
miRNA:   3'- -GACGGCggCUGua-------------UGGCUcUGC-GCCG- -5'
12172 3' -58.2 NC_003309.1 + 22392 0.67 0.513856
Target:  5'- aUGCCGCUGcGCGUcgaacGCCc--GCGCGGCc -3'
miRNA:   3'- gACGGCGGC-UGUA-----UGGcucUGCGCCG- -5'
12172 3' -58.2 NC_003309.1 + 1001 0.67 0.512833
Target:  5'- -cGUCGUCGAggacgaaCAUGCCGAugccGAcgccCGCGGCg -3'
miRNA:   3'- gaCGGCGGCU-------GUAUGGCU----CU----GCGCCG- -5'
12172 3' -58.2 NC_003309.1 + 36553 0.67 0.503666
Target:  5'- -cGCgGCCGGCGcgAUCGAGAa--GGCg -3'
miRNA:   3'- gaCGgCGGCUGUa-UGGCUCUgcgCCG- -5'
12172 3' -58.2 NC_003309.1 + 43070 0.67 0.503666
Target:  5'- aCUGCCGCCcGgGUaaucgugaacaACCGcGuAUGCGGCg -3'
miRNA:   3'- -GACGGCGGcUgUA-----------UGGCuC-UGCGCCG- -5'
12172 3' -58.2 NC_003309.1 + 18692 0.67 0.493564
Target:  5'- -gGCCGCCGAU---CCGGcGGC-CGGCc -3'
miRNA:   3'- gaCGGCGGCUGuauGGCU-CUGcGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.