miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12172 5' -54.8 NC_003309.1 + 30740 0.66 0.738652
Target:  5'- -uGCUGCCGaUCGGc-AAUCGUGAAUg -3'
miRNA:   3'- agUGACGGCgGGCCcaUUAGCACUUG- -5'
12172 5' -54.8 NC_003309.1 + 32187 0.67 0.662648
Target:  5'- gUCGCcgacGCCGCCCGcacccaagagaGcaAAUCGUGAGCg -3'
miRNA:   3'- -AGUGa---CGGCGGGC-----------CcaUUAGCACUUG- -5'
12172 5' -54.8 NC_003309.1 + 44174 0.71 0.428702
Target:  5'- gCGCUGCCGCUCGGcGUAcgCGacGAGu -3'
miRNA:   3'- aGUGACGGCGGGCC-CAUuaGCa-CUUg -5'
12172 5' -54.8 NC_003309.1 + 43073 1.11 0.000807
Target:  5'- cUCACUGCCGCCCGGGUAAUCGUGAACa -3'
miRNA:   3'- -AGUGACGGCGGGCCCAUUAGCACUUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.