miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12173 3' -60.9 NC_003309.1 + 4182 0.66 0.436944
Target:  5'- gGCagcgCGGAuGUcguccgccaGCUCGaACGCGCCgGUCg -3'
miRNA:   3'- -UGga--GCCU-CA---------CGAGC-UGCGCGGgCAG- -5'
12173 3' -60.9 NC_003309.1 + 45407 0.66 0.431368
Target:  5'- gACUUCGGAcacgagacGUcccauuccgcaaugcGCUCGACGUGCUCGg- -3'
miRNA:   3'- -UGGAGCCU--------CA---------------CGAGCUGCGCGGGCag -5'
12173 3' -60.9 NC_003309.1 + 16086 0.66 0.427673
Target:  5'- -gCUCGGcuGUGC-CGACGCcCCCGg- -3'
miRNA:   3'- ugGAGCCu-CACGaGCUGCGcGGGCag -5'
12173 3' -60.9 NC_003309.1 + 6519 0.66 0.409487
Target:  5'- uGCuCUCGGcc-GCUUGccGCGCGCCCGg- -3'
miRNA:   3'- -UG-GAGCCucaCGAGC--UGCGCGGGCag -5'
12173 3' -60.9 NC_003309.1 + 10708 0.68 0.326166
Target:  5'- aGCCUCGGcGcGCUCGAgcuccugcUGCGCggcggCCGUCu -3'
miRNA:   3'- -UGGAGCCuCaCGAGCU--------GCGCG-----GGCAG- -5'
12173 3' -60.9 NC_003309.1 + 51984 0.68 0.326166
Target:  5'- gACCUCGGAGU--UCGACGuCGCUgG-Ca -3'
miRNA:   3'- -UGGAGCCUCAcgAGCUGC-GCGGgCaG- -5'
12173 3' -60.9 NC_003309.1 + 12605 0.69 0.282538
Target:  5'- cGCCUCGGccGUGUU-GAUGCGCUCGaUCu -3'
miRNA:   3'- -UGGAGCCu-CACGAgCUGCGCGGGC-AG- -5'
12173 3' -60.9 NC_003309.1 + 11532 0.69 0.269059
Target:  5'- cGCCgu-GAGUGCUUG-CGCGCCCuUCu -3'
miRNA:   3'- -UGGagcCUCACGAGCuGCGCGGGcAG- -5'
12173 3' -60.9 NC_003309.1 + 28339 0.69 0.262516
Target:  5'- aACCcCGcGAGgaacGcCUCGACGCGCCCaUCg -3'
miRNA:   3'- -UGGaGC-CUCa---C-GAGCUGCGCGGGcAG- -5'
12173 3' -60.9 NC_003309.1 + 43619 0.72 0.174646
Target:  5'- gAUCUCGcGGUGCUUGuccGgGUGCCCGUCg -3'
miRNA:   3'- -UGGAGCcUCACGAGC---UgCGCGGGCAG- -5'
12173 3' -60.9 NC_003309.1 + 24265 0.72 0.161408
Target:  5'- uUCUCGG-GUGUgUCGAUGUaGCCCGUCa -3'
miRNA:   3'- uGGAGCCuCACG-AGCUGCG-CGGGCAG- -5'
12173 3' -60.9 NC_003309.1 + 44262 0.73 0.157201
Target:  5'- cGCCgCGGuuGUGCUCGACagucgaauguGCGCCCGg- -3'
miRNA:   3'- -UGGaGCCu-CACGAGCUG----------CGCGGGCag -5'
12173 3' -60.9 NC_003309.1 + 5609 0.76 0.094137
Target:  5'- cCUUCGGGGUGUUCGcCGUGCCguCGUCg -3'
miRNA:   3'- uGGAGCCUCACGAGCuGCGCGG--GCAG- -5'
12173 3' -60.9 NC_003309.1 + 43376 1.08 0.000327
Target:  5'- gACCUCGGAGUGCUCGACGCGCCCGUCu -3'
miRNA:   3'- -UGGAGCCUCACGAGCUGCGCGGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.