Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12176 | 5' | -54.7 | NC_003309.1 | + | 9051 | 0.69 | 0.616105 |
Target: 5'- gCCGcaGCGCGAGCGacauCAggaagcggaggccugGGGUUCGGCGGa -3' miRNA: 3'- -GGC--CGCGCUUGC----GU---------------UCCAAGCUGCUc -5' |
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12176 | 5' | -54.7 | NC_003309.1 | + | 44428 | 0.9 | 0.028318 |
Target: 5'- gCCGGCGaGcACGCAAGGUUCGACGAGc -3' miRNA: 3'- -GGCCGCgCuUGCGUUCCAAGCUGCUC- -5' |
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12176 | 5' | -54.7 | NC_003309.1 | + | 15983 | 0.77 | 0.220856 |
Target: 5'- gUCGGCGCGGcUGCGAGGuUUCGGCaGGGc -3' miRNA: 3'- -GGCCGCGCUuGCGUUCC-AAGCUG-CUC- -5' |
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12176 | 5' | -54.7 | NC_003309.1 | + | 44856 | 0.76 | 0.24493 |
Target: 5'- gCCGGCgGCGAuccGCGCAAGGUUCGcuCGc- -3' miRNA: 3'- -GGCCG-CGCU---UGCGUUCCAAGCu-GCuc -5' |
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12176 | 5' | -54.7 | NC_003309.1 | + | 13299 | 0.75 | 0.278038 |
Target: 5'- uUCGGaacuccccaacCGCGAucaggcuCGCAGGGUUCGACGAu -3' miRNA: 3'- -GGCC-----------GCGCUu------GCGUUCCAAGCUGCUc -5' |
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12176 | 5' | -54.7 | NC_003309.1 | + | 12865 | 0.74 | 0.354719 |
Target: 5'- gCCGcGCGCGccgaaaaccGCGCGAGG-UCGGCGAu -3' miRNA: 3'- -GGC-CGCGCu--------UGCGUUCCaAGCUGCUc -5' |
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12176 | 5' | -54.7 | NC_003309.1 | + | 22437 | 0.72 | 0.445151 |
Target: 5'- gCCGGCGuCGAGCGC--GGcgCG-CGAGa -3' miRNA: 3'- -GGCCGC-GCUUGCGuuCCaaGCuGCUC- -5' |
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12176 | 5' | -54.7 | NC_003309.1 | + | 35332 | 0.71 | 0.471701 |
Target: 5'- aCCgGGCGCacacccgcaGAACaagcugccuaucggGCGGGGUUCGACGAa -3' miRNA: 3'- -GG-CCGCG---------CUUG--------------CGUUCCAAGCUGCUc -5' |
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12176 | 5' | -54.7 | NC_003309.1 | + | 16202 | 0.71 | 0.484768 |
Target: 5'- gCCGGCGCGAAcuCGCAccAGucgUCGACGc- -3' miRNA: 3'- -GGCCGCGCUU--GCGU--UCca-AGCUGCuc -5' |
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12176 | 5' | -54.7 | NC_003309.1 | + | 50214 | 0.71 | 0.494937 |
Target: 5'- gCCGaGCaagcagacaGuCGAGCGCGAGGUUCGAaaugcCGGGg -3' miRNA: 3'- -GGC-CG---------C-GCUUGCGUUCCAAGCU-----GCUC- -5' |
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12176 | 5' | -54.7 | NC_003309.1 | + | 32970 | 0.7 | 0.557757 |
Target: 5'- aCCGcGCGCuGAgGCGCGAGaGcgCGACGAc -3' miRNA: 3'- -GGC-CGCG-CU-UGCGUUC-CaaGCUGCUc -5' |
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12176 | 5' | -54.7 | NC_003309.1 | + | 15443 | 0.66 | 0.781199 |
Target: 5'- aCGGCGuCGAgguagcGCGCGAGuGUcCGGCGc- -3' miRNA: 3'- gGCCGC-GCU------UGCGUUC-CAaGCUGCuc -5' |
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12176 | 5' | -54.7 | NC_003309.1 | + | 16067 | 0.68 | 0.633531 |
Target: 5'- cCCGGaUGCGAAUGCAcGaGagCGACGAu -3' miRNA: 3'- -GGCC-GCGCUUGCGUuC-CaaGCUGCUc -5' |
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12176 | 5' | -54.7 | NC_003309.1 | + | 45739 | 0.68 | 0.666165 |
Target: 5'- gCCGGUcguacaGCGggUGCuucGGGUccgUGACGAGc -3' miRNA: 3'- -GGCCG------CGCuuGCGu--UCCAa--GCUGCUC- -5' |
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12176 | 5' | -54.7 | NC_003309.1 | + | 34405 | 0.68 | 0.666165 |
Target: 5'- gCCGaGCGUGAACGCAucaaagccuuGGagCG-CGAGg -3' miRNA: 3'- -GGC-CGCGCUUGCGUu---------CCaaGCuGCUC- -5' |
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12176 | 5' | -54.7 | NC_003309.1 | + | 44179 | 0.68 | 0.676995 |
Target: 5'- gCGGCGCGcugcCGCucGGcguacgCGACGAGu -3' miRNA: 3'- gGCCGCGCuu--GCGuuCCaa----GCUGCUC- -5' |
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12176 | 5' | -54.7 | NC_003309.1 | + | 26659 | 0.68 | 0.687782 |
Target: 5'- aCCGGCcaugaGAACGCAAGGga-GuuGAGa -3' miRNA: 3'- -GGCCGcg---CUUGCGUUCCaagCugCUC- -5' |
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12176 | 5' | -54.7 | NC_003309.1 | + | 32903 | 0.67 | 0.698517 |
Target: 5'- gCCGgacuGCGCGAcgGCAGGGUUCu-CGGGa -3' miRNA: 3'- -GGC----CGCGCUugCGUUCCAAGcuGCUC- -5' |
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12176 | 5' | -54.7 | NC_003309.1 | + | 36549 | 0.67 | 0.744854 |
Target: 5'- gCCGGCGCGAuCGagAAGGcgaucgaagaaaagUUGACGAa -3' miRNA: 3'- -GGCCGCGCUuGCg-UUCCa-------------AGCUGCUc -5' |
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12176 | 5' | -54.7 | NC_003309.1 | + | 10048 | 0.66 | 0.751026 |
Target: 5'- gCCGcGCGCGucAGCGCc----UCGACGAGa -3' miRNA: 3'- -GGC-CGCGC--UUGCGuuccaAGCUGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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