Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12180 | 3' | -61.6 | NC_003309.1 | + | 10006 | 0.68 | 0.321352 |
Target: 5'- uUUCCCU-CU--UCGGCCAucgacuugaGCUGCGCCg -3' miRNA: 3'- -AGGGGAcGAgcAGCCGGU---------UGGCGCGG- -5' |
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12180 | 3' | -61.6 | NC_003309.1 | + | 46542 | 1.12 | 0.000162 |
Target: 5'- uUCCCCUGCUCGUCGGCCAACCGCGCCa -3' miRNA: 3'- -AGGGGACGAGCAGCCGGUUGGCGCGG- -5' |
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12180 | 3' | -61.6 | NC_003309.1 | + | 22364 | 0.78 | 0.05698 |
Target: 5'- --gCCUGCUCGUCGGCaAGCCgauguGCGCCg -3' miRNA: 3'- aggGGACGAGCAGCCGgUUGG-----CGCGG- -5' |
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12180 | 3' | -61.6 | NC_003309.1 | + | 6523 | 0.77 | 0.067284 |
Target: 5'- -gCCUUGCUC-UCGGCCGcuuGCCGCGCg -3' miRNA: 3'- agGGGACGAGcAGCCGGU---UGGCGCGg -5' |
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12180 | 3' | -61.6 | NC_003309.1 | + | 22510 | 0.72 | 0.163934 |
Target: 5'- cUCUCCUucgugGUUCGUUGGUCGACgGCgGCCa -3' miRNA: 3'- -AGGGGA-----CGAGCAGCCGGUUGgCG-CGG- -5' |
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12180 | 3' | -61.6 | NC_003309.1 | + | 11514 | 0.71 | 0.177243 |
Target: 5'- gCCCUUcugcgacgcgagGCUCGcCGuGUCGAUCGCGCCg -3' miRNA: 3'- aGGGGA------------CGAGCaGC-CGGUUGGCGCGG- -5' |
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12180 | 3' | -61.6 | NC_003309.1 | + | 41800 | 0.7 | 0.20676 |
Target: 5'- gUCgCCUGCUCGauaGGCCAGCCGaacgGUa -3' miRNA: 3'- -AGgGGACGAGCag-CCGGUUGGCg---CGg -5' |
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12180 | 3' | -61.6 | NC_003309.1 | + | 37771 | 0.7 | 0.223057 |
Target: 5'- aUCaCCCUGCUCGcCGuGCCGuUCGUGUg -3' miRNA: 3'- -AG-GGGACGAGCaGC-CGGUuGGCGCGg -5' |
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12180 | 3' | -61.6 | NC_003309.1 | + | 15520 | 0.69 | 0.271887 |
Target: 5'- cUCUUCUGCUCGaUCcGCCAcuGCUGCGgCg -3' miRNA: 3'- -AGGGGACGAGC-AGcCGGU--UGGCGCgG- -5' |
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12180 | 3' | -61.6 | NC_003309.1 | + | 43707 | 0.68 | 0.306562 |
Target: 5'- --gCgUGCcaUCGUCGGCUAGCagcgcgCGCGCCa -3' miRNA: 3'- aggGgACG--AGCAGCCGGUUG------GCGCGG- -5' |
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12180 | 3' | -61.6 | NC_003309.1 | + | 16814 | 0.68 | 0.313891 |
Target: 5'- gCUCgaGCUCGUCcucGCCGagAUUGCGCCg -3' miRNA: 3'- aGGGgaCGAGCAGc--CGGU--UGGCGCGG- -5' |
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12180 | 3' | -61.6 | NC_003309.1 | + | 4167 | 0.68 | 0.313891 |
Target: 5'- gUCCgCCaGCUCGaaCGcGCCggUCGCGCUc -3' miRNA: 3'- -AGG-GGaCGAGCa-GC-CGGuuGGCGCGG- -5' |
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12180 | 3' | -61.6 | NC_003309.1 | + | 7506 | 0.66 | 0.420992 |
Target: 5'- -gCCUUGCccuUCGUCcggacccguacGCCGGCCGuCGCCa -3' miRNA: 3'- agGGGACG---AGCAGc----------CGGUUGGC-GCGG- -5' |
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12180 | 3' | -61.6 | NC_003309.1 | + | 15345 | 0.67 | 0.336668 |
Target: 5'- gUCCCCcacccGCagCGUCGGCgAuggcuGCUGCGCg -3' miRNA: 3'- -AGGGGa----CGa-GCAGCCGgU-----UGGCGCGg -5' |
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12180 | 3' | -61.6 | NC_003309.1 | + | 14812 | 0.67 | 0.360627 |
Target: 5'- gCCCC-GCUUacc-GCgCAGCCGCGCCa -3' miRNA: 3'- aGGGGaCGAGcagcCG-GUUGGCGCGG- -5' |
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12180 | 3' | -61.6 | NC_003309.1 | + | 47610 | 0.67 | 0.360627 |
Target: 5'- -gUCCUGCc---CGGUCGucGCCGCGCCg -3' miRNA: 3'- agGGGACGagcaGCCGGU--UGGCGCGG- -5' |
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12180 | 3' | -61.6 | NC_003309.1 | + | 10901 | 0.67 | 0.360627 |
Target: 5'- gCCCCgccGCggUCG-CGGUC-GCCGCGCg -3' miRNA: 3'- aGGGGa--CG--AGCaGCCGGuUGGCGCGg -5' |
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12180 | 3' | -61.6 | NC_003309.1 | + | 50047 | 0.67 | 0.368042 |
Target: 5'- gCCCaucGCUCGacguccaucagcuUCGuGCgGACCGCGCUc -3' miRNA: 3'- aGGGga-CGAGC-------------AGC-CGgUUGGCGCGG- -5' |
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12180 | 3' | -61.6 | NC_003309.1 | + | 1049 | 0.67 | 0.368873 |
Target: 5'- aCgCCUGCUUuUCGGUCgu-CGCGCCc -3' miRNA: 3'- aGgGGACGAGcAGCCGGuugGCGCGG- -5' |
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12180 | 3' | -61.6 | NC_003309.1 | + | 36022 | 0.66 | 0.377247 |
Target: 5'- -aCgCUGUUUGUCGGCCccaugcacGGCUucaaGCGCCg -3' miRNA: 3'- agGgGACGAGCAGCCGG--------UUGG----CGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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