miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12181 3' -58.1 NC_003309.1 + 27746 0.66 0.565434
Target:  5'- -aGaCGACGCGCCGccCGGCGcaucgccgaaaUCAGUCc -3'
miRNA:   3'- ugCcGUUGCGCGGCa-GUCGC-----------AGUCAG- -5'
12181 3' -58.1 NC_003309.1 + 4183 0.66 0.559027
Target:  5'- -aGGCAGCGCGgaUGUCGuccgccagcucgaacGCGcCGGUCg -3'
miRNA:   3'- ugCCGUUGCGCg-GCAGU---------------CGCaGUCAG- -5'
12181 3' -58.1 NC_003309.1 + 22640 0.66 0.55583
Target:  5'- gGCGGCGcuggaagcgccgggcACGCcgucgccaccggcuGCCGUgCAGUGUCGGa- -3'
miRNA:   3'- -UGCCGU---------------UGCG--------------CGGCA-GUCGCAGUCag -5'
12181 3' -58.1 NC_003309.1 + 32391 0.66 0.554766
Target:  5'- aGCGGCGACGgcuCGCUG-CGGCGgccguGUCc -3'
miRNA:   3'- -UGCCGUUGC---GCGGCaGUCGCagu--CAG- -5'
12181 3' -58.1 NC_003309.1 + 14122 0.66 0.553702
Target:  5'- uCGGCGACGUGCCagaucuucacaccGUCAGacaCGUacuucgccCAGUCg -3'
miRNA:   3'- uGCCGUUGCGCGG-------------CAGUC---GCA--------GUCAG- -5'
12181 3' -58.1 NC_003309.1 + 17812 0.66 0.544158
Target:  5'- uCGGCGAuCGuCGCCGUguGCGcguUCGG-Cg -3'
miRNA:   3'- uGCCGUU-GC-GCGGCAguCGC---AGUCaG- -5'
12181 3' -58.1 NC_003309.1 + 4988 0.66 0.52315
Target:  5'- aGCGGCuuccGCGCGuUCGaUCuGCG-CGGUCa -3'
miRNA:   3'- -UGCCGu---UGCGC-GGC-AGuCGCaGUCAG- -5'
12181 3' -58.1 NC_003309.1 + 18780 0.67 0.491234
Target:  5'- gACGGCAagaucgccgugaaACGauCGCCGgCGGCGaUAGUCg -3'
miRNA:   3'- -UGCCGU-------------UGC--GCGGCaGUCGCaGUCAG- -5'
12181 3' -58.1 NC_003309.1 + 43523 0.67 0.482136
Target:  5'- gGCGGCcaucGCGCGCaucagGUC-GCGgCAGUCu -3'
miRNA:   3'- -UGCCGu---UGCGCGg----CAGuCGCaGUCAG- -5'
12181 3' -58.1 NC_003309.1 + 5060 0.67 0.462218
Target:  5'- cGCGGCGGCcgGUGCCGcgaCGGCgGUCGGa- -3'
miRNA:   3'- -UGCCGUUG--CGCGGCa--GUCG-CAGUCag -5'
12181 3' -58.1 NC_003309.1 + 22454 0.67 0.452422
Target:  5'- cGCGGCGAuCGCacGCUGcCGGCGUCGa-- -3'
miRNA:   3'- -UGCCGUU-GCG--CGGCaGUCGCAGUcag -5'
12181 3' -58.1 NC_003309.1 + 5462 0.67 0.452422
Target:  5'- cGCGGCcAUcuucuuCGCCGUCAGCuUCAGaUCg -3'
miRNA:   3'- -UGCCGuUGc-----GCGGCAGUCGcAGUC-AG- -5'
12181 3' -58.1 NC_003309.1 + 7892 0.69 0.387238
Target:  5'- uCGGCAa---GCCGaUCGGCGUCGGUg -3'
miRNA:   3'- uGCCGUugcgCGGC-AGUCGCAGUCAg -5'
12181 3' -58.1 NC_003309.1 + 48835 0.69 0.387238
Target:  5'- gACGcuuCAGCGuCGCCGUUcGCGUCAGg- -3'
miRNA:   3'- -UGCc--GUUGC-GCGGCAGuCGCAGUCag -5'
12181 3' -58.1 NC_003309.1 + 43780 0.69 0.369781
Target:  5'- cCGGCAAacgucucucCGCGCa-UCGGCGUCuGUCc -3'
miRNA:   3'- uGCCGUU---------GCGCGgcAGUCGCAGuCAG- -5'
12181 3' -58.1 NC_003309.1 + 53265 0.69 0.369781
Target:  5'- aACcGCucGCGCGCCGUCuucgccGCGUgaCAGUCa -3'
miRNA:   3'- -UGcCGu-UGCGCGGCAGu-----CGCA--GUCAG- -5'
12181 3' -58.1 NC_003309.1 + 44180 0.69 0.361257
Target:  5'- cGCGGC-GCGCuGCCGcUCGGCGUacgcgacgAGUCc -3'
miRNA:   3'- -UGCCGuUGCG-CGGC-AGUCGCAg-------UCAG- -5'
12181 3' -58.1 NC_003309.1 + 10952 0.72 0.254608
Target:  5'- uACGcGCGA-GCGCCGUCuGCGccgucgccgcgcuuUCAGUCg -3'
miRNA:   3'- -UGC-CGUUgCGCGGCAGuCGC--------------AGUCAG- -5'
12181 3' -58.1 NC_003309.1 + 37583 0.74 0.19284
Target:  5'- uACGGCGACGa-CCG-CGGCGUCAacGUCg -3'
miRNA:   3'- -UGCCGUUGCgcGGCaGUCGCAGU--CAG- -5'
12181 3' -58.1 NC_003309.1 + 11973 0.74 0.187792
Target:  5'- cGCGGC-GCGCGCCGcgUCGGCGUUgaAGcCg -3'
miRNA:   3'- -UGCCGuUGCGCGGC--AGUCGCAG--UCaG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.