Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12182 | 3' | -58.8 | NC_003309.1 | + | 11462 | 0.66 | 0.497867 |
Target: 5'- aGUUCGCACgUAGuUCGucGCCGC-CGUCu -3' miRNA: 3'- aCGAGCGUG-GUC-AGCu-CGGUGcGCAG- -5' |
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12182 | 3' | -58.8 | NC_003309.1 | + | 2469 | 0.66 | 0.487721 |
Target: 5'- cGaCUCGCGCagcgCGAGCCGcCGCGa- -3' miRNA: 3'- aC-GAGCGUGgucaGCUCGGU-GCGCag -5' |
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12182 | 3' | -58.8 | NC_003309.1 | + | 39961 | 0.66 | 0.487721 |
Target: 5'- cGCggCGCGCUuGUCGAGCaccuguuGCGCGa- -3' miRNA: 3'- aCGa-GCGUGGuCAGCUCGg------UGCGCag -5' |
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12182 | 3' | -58.8 | NC_003309.1 | + | 4871 | 0.67 | 0.467728 |
Target: 5'- cGCUUGCACCcgcuGaUUGAcgGCUGCGCGUUc -3' miRNA: 3'- aCGAGCGUGGu---C-AGCU--CGGUGCGCAG- -5' |
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12182 | 3' | -58.8 | NC_003309.1 | + | 53262 | 0.67 | 0.448166 |
Target: 5'- cGCUCGCGCgCcGUCuucGCCGCGUGa- -3' miRNA: 3'- aCGAGCGUG-GuCAGcu-CGGUGCGCag -5' |
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12182 | 3' | -58.8 | NC_003309.1 | + | 5477 | 0.67 | 0.4472 |
Target: 5'- uUGCgaUCGCACCAG-CGcGGCCAucuucuuCGcCGUCa -3' miRNA: 3'- -ACG--AGCGUGGUCaGC-UCGGU-------GC-GCAG- -5' |
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12182 | 3' | -58.8 | NC_003309.1 | + | 15587 | 0.67 | 0.438556 |
Target: 5'- uUGCUgGcCACCgaAGUCGAGCgGCGaCGa- -3' miRNA: 3'- -ACGAgC-GUGG--UCAGCUCGgUGC-GCag -5' |
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12182 | 3' | -58.8 | NC_003309.1 | + | 3487 | 0.67 | 0.429065 |
Target: 5'- cUGCUUGCGCUccgCGgcagcaaaaGGUCGCGCGUCu -3' miRNA: 3'- -ACGAGCGUGGucaGC---------UCGGUGCGCAG- -5' |
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12182 | 3' | -58.8 | NC_003309.1 | + | 6682 | 0.68 | 0.410453 |
Target: 5'- aGCUCgaaaGCGCCugcGUCGAGCguCGuUGUCg -3' miRNA: 3'- aCGAG----CGUGGu--CAGCUCGguGC-GCAG- -5' |
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12182 | 3' | -58.8 | NC_003309.1 | + | 48116 | 0.68 | 0.400432 |
Target: 5'- cGCUCGCGCUuacuGUCGAacuugauGCCGuCGUGcUCg -3' miRNA: 3'- aCGAGCGUGGu---CAGCU-------CGGU-GCGC-AG- -5' |
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12182 | 3' | -58.8 | NC_003309.1 | + | 43687 | 0.68 | 0.374775 |
Target: 5'- aGCgcgCGCGCCAGaUCGAacacGCCGaccaGCGUg -3' miRNA: 3'- aCGa--GCGUGGUC-AGCU----CGGUg---CGCAg -5' |
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12182 | 3' | -58.8 | NC_003309.1 | + | 35670 | 0.69 | 0.357741 |
Target: 5'- cUGCUCGCACCGcgCGAGauCCAgCGCGa- -3' miRNA: 3'- -ACGAGCGUGGUcaGCUC--GGU-GCGCag -5' |
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12182 | 3' | -58.8 | NC_003309.1 | + | 9540 | 0.69 | 0.34943 |
Target: 5'- cGCggaucgaacugCGCGCCGcGUCGAGCgCGCGCa-- -3' miRNA: 3'- aCGa----------GCGUGGU-CAGCUCG-GUGCGcag -5' |
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12182 | 3' | -58.8 | NC_003309.1 | + | 16192 | 0.69 | 0.341257 |
Target: 5'- -aCUCGCACCAGUCGucgacGCCGaucgaucCGUCg -3' miRNA: 3'- acGAGCGUGGUCAGCu----CGGUgc-----GCAG- -5' |
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12182 | 3' | -58.8 | NC_003309.1 | + | 1703 | 0.69 | 0.325329 |
Target: 5'- aGCUugCGCGCCAuGUCGAGCgcgagCACGCa-- -3' miRNA: 3'- aCGA--GCGUGGU-CAGCUCG-----GUGCGcag -5' |
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12182 | 3' | -58.8 | NC_003309.1 | + | 11877 | 0.7 | 0.30996 |
Target: 5'- cUGCUgauuCAUCAGcgCGAGCuCGCGCGUCa -3' miRNA: 3'- -ACGAgc--GUGGUCa-GCUCG-GUGCGCAG- -5' |
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12182 | 3' | -58.8 | NC_003309.1 | + | 515 | 0.7 | 0.295151 |
Target: 5'- gGCUCGC-CgGGUCGAGCCccagcauUGCGcCg -3' miRNA: 3'- aCGAGCGuGgUCAGCUCGGu------GCGCaG- -5' |
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12182 | 3' | -58.8 | NC_003309.1 | + | 31426 | 0.71 | 0.241422 |
Target: 5'- cGCUCGCuggcgACCAGUgCGcAGCCGCcgGCGUg -3' miRNA: 3'- aCGAGCG-----UGGUCA-GC-UCGGUG--CGCAg -5' |
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12182 | 3' | -58.8 | NC_003309.1 | + | 7812 | 0.73 | 0.176346 |
Target: 5'- gGCgaGCGCCAuGUCGAGCgcgccauguaCGCGCGUCa -3' miRNA: 3'- aCGagCGUGGU-CAGCUCG----------GUGCGCAG- -5' |
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12182 | 3' | -58.8 | NC_003309.1 | + | 21988 | 0.74 | 0.15416 |
Target: 5'- gUGCUCGaugaGCCGuugcUCGAGCCGCGCG-Cg -3' miRNA: 3'- -ACGAGCg---UGGUc---AGCUCGGUGCGCaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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