miRNA: 3'- aGGCCGAaa-UG-GCCcuUGUCGG-GGCa -5'
miRNA: 3'- aGGCCGaaauGGCC-CUuGUCGGGGCa -5'
miRNA: 3'- aGGCCGaaa---UGGCCCU---UGUCGGG--GCA- -5'
miRNA: 3'- aGGCCGAaaUGGCCCuugUCGGGGca -5'
miRNA: 3'- -AGGCCGAAAUGGCCCUUGUCGGGGCA- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 12183 | 5' | -58.1 | NC_003309.1 | + | 18712 | 0.67 | 0.469568 |
|
Target: 5'- gCCGGCUgcgGCgCGGauACGGCCgCCGa -3' miRNA: 3'- aGGCCGAaa-UG-GCCcuUGUCGG-GGCa -5' |
|||||||
| 12183 | 5' | -58.1 | NC_003309.1 | + | 11766 | 0.7 | 0.326873 |
|
Target: 5'- gUCGGCgcgcCCGGcGAuCAGCCCCGc -3' miRNA: 3'- aGGCCGaaauGGCC-CUuGUCGGGGCa -5' |
|||||||
| 12183 | 5' | -58.1 | NC_003309.1 | + | 19637 | 0.71 | 0.296604 |
|
Target: 5'- cCCGGCcccuucGCCGGGAaccACGGCCCgaCGUu -3' miRNA: 3'- aGGCCGaaa---UGGCCCU---UGUCGGG--GCA- -5' |
|||||||
| 12183 | 5' | -58.1 | NC_003309.1 | + | 518 | 0.72 | 0.242693 |
|
Target: 5'- gCCGGCUc-GCCGGGucgAGCCCCa- -3' miRNA: 3'- aGGCCGAaaUGGCCCuugUCGGGGca -5' |
|||||||
| 12183 | 5' | -58.1 | NC_003309.1 | + | 47586 | 1.07 | 0.000725 |
|
Target: 5'- gUCCGGCUUUACCGGGAACAGCCCCGUc -3' miRNA: 3'- -AGGCCGAAAUGGCCCUUGUCGGGGCA- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home