Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12184 | 5' | -57 | NC_003309.1 | + | 52293 | 0.8 | 0.092208 |
Target: 5'- cGUGCUGUcuaagaucGCCAGCgCAcUUGCCGUGCCCg -3' miRNA: 3'- -CACGGCA--------CGGUUG-GU-AGCGGCAUGGG- -5' |
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12184 | 5' | -57 | NC_003309.1 | + | 47908 | 1.11 | 0.000441 |
Target: 5'- cGUGCCGUGCCAACCAUCGCCGUACCCu -3' miRNA: 3'- -CACGGCACGGUUGGUAGCGGCAUGGG- -5' |
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12184 | 5' | -57 | NC_003309.1 | + | 46967 | 0.67 | 0.568471 |
Target: 5'- -aGauGUGCguGCCGUCGUCGUGCg- -3' miRNA: 3'- caCggCACGguUGGUAGCGGCAUGgg -5' |
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12184 | 5' | -57 | NC_003309.1 | + | 46312 | 0.66 | 0.619371 |
Target: 5'- -cGCCGaGCaCGGCCuucugcgcacgcgagCGCgCGUGCCCu -3' miRNA: 3'- caCGGCaCG-GUUGGua-------------GCG-GCAUGGG- -5' |
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12184 | 5' | -57 | NC_003309.1 | + | 43530 | 0.66 | 0.622638 |
Target: 5'- -cGCCGUcGgCGGCCAUCGCgCGcAUCa -3' miRNA: 3'- caCGGCA-CgGUUGGUAGCG-GCaUGGg -5' |
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12184 | 5' | -57 | NC_003309.1 | + | 43317 | 0.77 | 0.136225 |
Target: 5'- -gGCCGUGCguCGACCA-CGCCuUGCCCa -3' miRNA: 3'- caCGGCACG--GUUGGUaGCGGcAUGGG- -5' |
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12184 | 5' | -57 | NC_003309.1 | + | 38979 | 0.66 | 0.621549 |
Target: 5'- -aGCCGgcaGCCGauacguccaucgaACCuuUCGCCGcgucgACCCa -3' miRNA: 3'- caCGGCa--CGGU-------------UGGu-AGCGGCa----UGGG- -5' |
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12184 | 5' | -57 | NC_003309.1 | + | 37835 | 0.66 | 0.633531 |
Target: 5'- -gGCCGUGCUGuuucucgugcuGCUGUCGaUCGUcACCCc -3' miRNA: 3'- caCGGCACGGU-----------UGGUAGC-GGCA-UGGG- -5' |
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12184 | 5' | -57 | NC_003309.1 | + | 32203 | 0.72 | 0.299563 |
Target: 5'- -aGCgaGUGCCGAUCAggUCGCCGacgccGCCCg -3' miRNA: 3'- caCGg-CACGGUUGGU--AGCGGCa----UGGG- -5' |
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12184 | 5' | -57 | NC_003309.1 | + | 31676 | 0.67 | 0.562036 |
Target: 5'- -gGCCGagGCCGACCgcGacauuccgaagcugcUCGCaGUGCCCg -3' miRNA: 3'- caCGGCa-CGGUUGG--U---------------AGCGgCAUGGG- -5' |
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12184 | 5' | -57 | NC_003309.1 | + | 31513 | 0.68 | 0.505201 |
Target: 5'- -cGCCG-GCCAGCCGaCGgCG-GCCUa -3' miRNA: 3'- caCGGCaCGGUUGGUaGCgGCaUGGG- -5' |
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12184 | 5' | -57 | NC_003309.1 | + | 29514 | 0.76 | 0.151987 |
Target: 5'- -gGCCGU-CCGACCAUCGgCGauaUGCCCg -3' miRNA: 3'- caCGGCAcGGUUGGUAGCgGC---AUGGG- -5' |
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12184 | 5' | -57 | NC_003309.1 | + | 27738 | 0.66 | 0.611752 |
Target: 5'- -cGCCGc-CCGGCgCAUCGCCGaaaucaguCCCg -3' miRNA: 3'- caCGGCacGGUUG-GUAGCGGCau------GGG- -5' |
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12184 | 5' | -57 | NC_003309.1 | + | 23548 | 0.68 | 0.500057 |
Target: 5'- -aGCCGcucgGCCAucuucucguacuCCGUgaaagggaaugcgaCGCCGUACCCu -3' miRNA: 3'- caCGGCa---CGGUu-----------GGUA--------------GCGGCAUGGG- -5' |
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12184 | 5' | -57 | NC_003309.1 | + | 22617 | 0.67 | 0.568471 |
Target: 5'- -cGCCGUcGCC-ACCGgcuGCCGUGCa- -3' miRNA: 3'- caCGGCA-CGGuUGGUag-CGGCAUGgg -5' |
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12184 | 5' | -57 | NC_003309.1 | + | 19035 | 0.66 | 0.58896 |
Target: 5'- -gGCCGuUGCUGgaucugcgcGCCGUCGUCGaucgccgcauacuUGCCCg -3' miRNA: 3'- caCGGC-ACGGU---------UGGUAGCGGC-------------AUGGG- -5' |
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12184 | 5' | -57 | NC_003309.1 | + | 18517 | 0.66 | 0.590042 |
Target: 5'- -cGCCGUGaCCu-CCGUCuugaugacGCCGUAUCg -3' miRNA: 3'- caCGGCAC-GGuuGGUAG--------CGGCAUGGg -5' |
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12184 | 5' | -57 | NC_003309.1 | + | 17257 | 0.72 | 0.299563 |
Target: 5'- -cGCUGcUGCCAccACCAcCGCCGccGCCCu -3' miRNA: 3'- caCGGC-ACGGU--UGGUaGCGGCa-UGGG- -5' |
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12184 | 5' | -57 | NC_003309.1 | + | 17056 | 0.72 | 0.278038 |
Target: 5'- cGUGCCGuUGUUGGCCGUCcCCGcgaGCCCg -3' miRNA: 3'- -CACGGC-ACGGUUGGUAGcGGCa--UGGG- -5' |
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12184 | 5' | -57 | NC_003309.1 | + | 14457 | 0.7 | 0.36316 |
Target: 5'- uUGCCGUgugccagagauaGCCGagguauuuGCCGUCGaCCGUcGCCCc -3' miRNA: 3'- cACGGCA------------CGGU--------UGGUAGC-GGCA-UGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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