miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12184 5' -57 NC_003309.1 + 23548 0.68 0.500057
Target:  5'- -aGCCGcucgGCCAucuucucguacuCCGUgaaagggaaugcgaCGCCGUACCCu -3'
miRNA:   3'- caCGGCa---CGGUu-----------GGUA--------------GCGGCAUGGG- -5'
12184 5' -57 NC_003309.1 + 27738 0.66 0.611752
Target:  5'- -cGCCGc-CCGGCgCAUCGCCGaaaucaguCCCg -3'
miRNA:   3'- caCGGCacGGUUG-GUAGCGGCau------GGG- -5'
12184 5' -57 NC_003309.1 + 29514 0.76 0.151987
Target:  5'- -gGCCGU-CCGACCAUCGgCGauaUGCCCg -3'
miRNA:   3'- caCGGCAcGGUUGGUAGCgGC---AUGGG- -5'
12184 5' -57 NC_003309.1 + 31513 0.68 0.505201
Target:  5'- -cGCCG-GCCAGCCGaCGgCG-GCCUa -3'
miRNA:   3'- caCGGCaCGGUUGGUaGCgGCaUGGG- -5'
12184 5' -57 NC_003309.1 + 31676 0.67 0.562036
Target:  5'- -gGCCGagGCCGACCgcGacauuccgaagcugcUCGCaGUGCCCg -3'
miRNA:   3'- caCGGCa-CGGUUGG--U---------------AGCGgCAUGGG- -5'
12184 5' -57 NC_003309.1 + 32203 0.72 0.299563
Target:  5'- -aGCgaGUGCCGAUCAggUCGCCGacgccGCCCg -3'
miRNA:   3'- caCGg-CACGGUUGGU--AGCGGCa----UGGG- -5'
12184 5' -57 NC_003309.1 + 37835 0.66 0.633531
Target:  5'- -gGCCGUGCUGuuucucgugcuGCUGUCGaUCGUcACCCc -3'
miRNA:   3'- caCGGCACGGU-----------UGGUAGC-GGCA-UGGG- -5'
12184 5' -57 NC_003309.1 + 38979 0.66 0.621549
Target:  5'- -aGCCGgcaGCCGauacguccaucgaACCuuUCGCCGcgucgACCCa -3'
miRNA:   3'- caCGGCa--CGGU-------------UGGu-AGCGGCa----UGGG- -5'
12184 5' -57 NC_003309.1 + 43317 0.77 0.136225
Target:  5'- -gGCCGUGCguCGACCA-CGCCuUGCCCa -3'
miRNA:   3'- caCGGCACG--GUUGGUaGCGGcAUGGG- -5'
12184 5' -57 NC_003309.1 + 43530 0.66 0.622638
Target:  5'- -cGCCGUcGgCGGCCAUCGCgCGcAUCa -3'
miRNA:   3'- caCGGCA-CgGUUGGUAGCG-GCaUGGg -5'
12184 5' -57 NC_003309.1 + 46312 0.66 0.619371
Target:  5'- -cGCCGaGCaCGGCCuucugcgcacgcgagCGCgCGUGCCCu -3'
miRNA:   3'- caCGGCaCG-GUUGGua-------------GCG-GCAUGGG- -5'
12184 5' -57 NC_003309.1 + 46967 0.67 0.568471
Target:  5'- -aGauGUGCguGCCGUCGUCGUGCg- -3'
miRNA:   3'- caCggCACGguUGGUAGCGGCAUGgg -5'
12184 5' -57 NC_003309.1 + 47908 1.11 0.000441
Target:  5'- cGUGCCGUGCCAACCAUCGCCGUACCCu -3'
miRNA:   3'- -CACGGCACGGUUGGUAGCGGCAUGGG- -5'
12184 5' -57 NC_003309.1 + 52293 0.8 0.092208
Target:  5'- cGUGCUGUcuaagaucGCCAGCgCAcUUGCCGUGCCCg -3'
miRNA:   3'- -CACGGCA--------CGGUUG-GU-AGCGGCAUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.