miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12188 3' -50.8 NC_003309.1 + 18712 0.66 0.909373
Target:  5'- gCCGGcUGCGGcGcgGAuacGGCCgCCGa -3'
miRNA:   3'- -GGCC-ACGCCuUuaCUuuuUCGG-GGCg -5'
12188 3' -50.8 NC_003309.1 + 37573 0.67 0.8725
Target:  5'- aCCGcG-GCGucaacgucGAAGUGAAGGGGCCCgggCGCu -3'
miRNA:   3'- -GGC-CaCGC--------CUUUACUUUUUCGGG---GCG- -5'
12188 3' -50.8 NC_003309.1 + 37349 0.67 0.8725
Target:  5'- aUCGGcGCGGAgucGAUGAGAucacGGGCgucuaCCUGCg -3'
miRNA:   3'- -GGCCaCGCCU---UUACUUU----UUCG-----GGGCG- -5'
12188 3' -50.8 NC_003309.1 + 32253 0.68 0.864316
Target:  5'- cCCGcG-GCGGAAagGAAGGGGCUaagaCCGUu -3'
miRNA:   3'- -GGC-CaCGCCUUuaCUUUUUCGG----GGCG- -5'
12188 3' -50.8 NC_003309.1 + 23088 0.68 0.855878
Target:  5'- cCUGGcugGCGGucgcAUGAAGuacagcgccGCCCCGCc -3'
miRNA:   3'- -GGCCa--CGCCuu--UACUUUuu-------CGGGGCG- -5'
12188 3' -50.8 NC_003309.1 + 40506 0.68 0.847193
Target:  5'- gCCGaUGCGGAcGUGGucuGGCCgCgGCg -3'
miRNA:   3'- -GGCcACGCCUuUACUuuuUCGG-GgCG- -5'
12188 3' -50.8 NC_003309.1 + 45280 0.73 0.570985
Target:  5'- gCCGGUacaGCGGAuuUGGucGAAugccGGCCgCCGCg -3'
miRNA:   3'- -GGCCA---CGCCUuuACU--UUU----UCGG-GGCG- -5'
12188 3' -50.8 NC_003309.1 + 45206 0.76 0.433338
Target:  5'- aUGGgGCGGuaauUGAAAAGGCCgCCGCc -3'
miRNA:   3'- gGCCaCGCCuuu-ACUUUUUCGG-GGCG- -5'
12188 3' -50.8 NC_003309.1 + 52101 1.16 0.001122
Target:  5'- cCCGGUGCGGAAAUGAAAAAGCCCCGCa -3'
miRNA:   3'- -GGCCACGCCUUUACUUUUUCGGGGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.