miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12189 5' -53.8 NC_003309.1 + 52286 1.07 0.00154
Target:  5'- uCUAAGAUCGCCAGCGCACUUGCCGUGc -3'
miRNA:   3'- -GAUUCUAGCGGUCGCGUGAACGGCAC- -5'
12189 5' -53.8 NC_003309.1 + 2626 0.79 0.161673
Target:  5'- gUAAG--CGCUAGCGCGCUUGCCGg- -3'
miRNA:   3'- gAUUCuaGCGGUCGCGUGAACGGCac -5'
12189 5' -53.8 NC_003309.1 + 42053 0.76 0.230827
Target:  5'- ---cGAUCGUcaCAGCGCACUUGUCGUu -3'
miRNA:   3'- gauuCUAGCG--GUCGCGUGAACGGCAc -5'
12189 5' -53.8 NC_003309.1 + 47923 0.75 0.292198
Target:  5'- ---cGGUCGUC-GCGCACgcgUGCCGUGc -3'
miRNA:   3'- gauuCUAGCGGuCGCGUGa--ACGGCAC- -5'
12189 5' -53.8 NC_003309.1 + 6235 0.71 0.46092
Target:  5'- -cGAuGUCGCCuggcGUGUACUUGCCGUa -3'
miRNA:   3'- gaUUcUAGCGGu---CGCGUGAACGGCAc -5'
12189 5' -53.8 NC_003309.1 + 20612 0.7 0.545773
Target:  5'- -aGAGAUCuGCCGcCGCGC-UGCCGUc -3'
miRNA:   3'- gaUUCUAG-CGGUcGCGUGaACGGCAc -5'
12189 5' -53.8 NC_003309.1 + 15391 0.7 0.545773
Target:  5'- -cGAGAUCGCCaAGCGCAacgcacagcGCCGa- -3'
miRNA:   3'- gaUUCUAGCGG-UCGCGUgaa------CGGCac -5'
12189 5' -53.8 NC_003309.1 + 46746 0.7 0.545773
Target:  5'- -----uUCGCCAGCGCGC--GCCGg- -3'
miRNA:   3'- gauucuAGCGGUCGCGUGaaCGGCac -5'
12189 5' -53.8 NC_003309.1 + 12876 0.69 0.567829
Target:  5'- cCUGAGAcaUCGCC-GCGCGC--GCCGa- -3'
miRNA:   3'- -GAUUCU--AGCGGuCGCGUGaaCGGCac -5'
12189 5' -53.8 NC_003309.1 + 3069 0.68 0.668704
Target:  5'- aCUGcuGGAUCGCCuGCGCA--UGCCc-- -3'
miRNA:   3'- -GAU--UCUAGCGGuCGCGUgaACGGcac -5'
12189 5' -53.8 NC_003309.1 + 39261 0.67 0.723976
Target:  5'- ----cGUCGCCAGCGCGCa-GCCc-- -3'
miRNA:   3'- gauucUAGCGGUCGCGUGaaCGGcac -5'
12189 5' -53.8 NC_003309.1 + 904 0.66 0.734793
Target:  5'- -----cUUGCCGGUGCGCUUGuuGa- -3'
miRNA:   3'- gauucuAGCGGUCGCGUGAACggCac -5'
12189 5' -53.8 NC_003309.1 + 44911 0.65 0.786006
Target:  5'- ---cGggCGuCCAGCgguacaugaacucGCGCUUGCCGUa -3'
miRNA:   3'- gauuCuaGC-GGUCG-------------CGUGAACGGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.