miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12190 3' -55.4 NC_003309.1 + 40163 0.68 0.591767
Target:  5'- cGCGAGCC---GUGAGaCGugGGCGGUa -3'
miRNA:   3'- -CGUUCGGuucCGUUC-GCugCUGCCGg -5'
12190 3' -55.4 NC_003309.1 + 32968 0.68 0.591767
Target:  5'- cGCGcGCUGAGGCGcgagAGCG-CGACGaCCc -3'
miRNA:   3'- -CGUuCGGUUCCGU----UCGCuGCUGCcGG- -5'
12190 3' -55.4 NC_003309.1 + 12983 0.68 0.602737
Target:  5'- -aAAGCCAuAGGCAuuCGAgcCGACaGCCg -3'
miRNA:   3'- cgUUCGGU-UCCGUucGCU--GCUGcCGG- -5'
12190 3' -55.4 NC_003309.1 + 32833 0.68 0.602737
Target:  5'- uGCGGGCCGAaguccugugcGGCAA-CGACGAgucgcuggagaUGGCUg -3'
miRNA:   3'- -CGUUCGGUU----------CCGUUcGCUGCU-----------GCCGG- -5'
12190 3' -55.4 NC_003309.1 + 18316 0.68 0.602737
Target:  5'- gGCAuaucGGCCGAcGCGA-CGACGGagcCGGCCc -3'
miRNA:   3'- -CGU----UCGGUUcCGUUcGCUGCU---GCCGG- -5'
12190 3' -55.4 NC_003309.1 + 4680 0.68 0.602737
Target:  5'- cGCGAGCCGAaacgcuacGGCGcGCauucgcgccuuGACGAuCGGCUc -3'
miRNA:   3'- -CGUUCGGUU--------CCGUuCG-----------CUGCU-GCCGG- -5'
12190 3' -55.4 NC_003309.1 + 37060 0.69 0.505905
Target:  5'- uGC-AGCCGAGGCAGacGCGgcaaagcaagucGCGAUcGCCa -3'
miRNA:   3'- -CGuUCGGUUCCGUU--CGC------------UGCUGcCGG- -5'
12190 3' -55.4 NC_003309.1 + 11570 0.69 0.495518
Target:  5'- cGCAcGCCGucGGC-AGCGuccCGuGCGGCCa -3'
miRNA:   3'- -CGUuCGGUu-CCGuUCGCu--GC-UGCCGG- -5'
12190 3' -55.4 NC_003309.1 + 43588 0.7 0.435423
Target:  5'- gGCAGGUaCGAGcGCAGGCcccaguACGGCGGCg -3'
miRNA:   3'- -CGUUCG-GUUC-CGUUCGc-----UGCUGCCGg -5'
12190 3' -55.4 NC_003309.1 + 18847 0.7 0.446131
Target:  5'- -gAAGCgCGcGGCAAGCGucaccgugucaccguUGACGGCCu -3'
miRNA:   3'- cgUUCG-GUuCCGUUCGCu--------------GCUGCCGG- -5'
12190 3' -55.4 NC_003309.1 + 3966 0.7 0.45401
Target:  5'- uGCGA-CCAAGGCAcgucGGCGcuccgauGCGGCaGCCa -3'
miRNA:   3'- -CGUUcGGUUCCGU----UCGC-------UGCUGcCGG- -5'
12190 3' -55.4 NC_003309.1 + 9055 0.7 0.464966
Target:  5'- cCAAGCCGcAGcGCGAGCGACaucagGAagcggaGGCCu -3'
miRNA:   3'- cGUUCGGU-UC-CGUUCGCUG-----CUg-----CCGG- -5'
12190 3' -55.4 NC_003309.1 + 21642 0.7 0.485229
Target:  5'- --cGGUCAAcGUAAGCGACGACGcGaCCg -3'
miRNA:   3'- cguUCGGUUcCGUUCGCUGCUGC-C-GG- -5'
12190 3' -55.4 NC_003309.1 + 10681 0.71 0.425818
Target:  5'- cGCGgcGGCCGucucGCGGGCGAUGAUcGCCg -3'
miRNA:   3'- -CGU--UCGGUuc--CGUUCGCUGCUGcCGG- -5'
12190 3' -55.4 NC_003309.1 + 34545 0.71 0.406994
Target:  5'- cGCGAGCagcguaGCGAGCacccgucgauGugGGCGGCCg -3'
miRNA:   3'- -CGUUCGguuc--CGUUCG----------CugCUGCCGG- -5'
12190 3' -55.4 NC_003309.1 + 33617 0.72 0.337154
Target:  5'- gGC-AGCCGGGGCGacAGCuACGACaaugcgcuGGCCg -3'
miRNA:   3'- -CGuUCGGUUCCGU--UCGcUGCUG--------CCGG- -5'
12190 3' -55.4 NC_003309.1 + 34855 0.72 0.370954
Target:  5'- aCGAGCacgucaucacCGAGGCAAaCGugGAgGGCCg -3'
miRNA:   3'- cGUUCG----------GUUCCGUUcGCugCUgCCGG- -5'
12190 3' -55.4 NC_003309.1 + 7890 0.73 0.313311
Target:  5'- gGCAAGCCGAucGGCGucGGUGAaCGuCGGCg -3'
miRNA:   3'- -CGUUCGGUU--CCGU--UCGCU-GCuGCCGg -5'
12190 3' -55.4 NC_003309.1 + 32428 0.73 0.298139
Target:  5'- aGC-AGCCAagcgagagucgaAGGaaugcaccugccCGAGCGGCGACGGCUc -3'
miRNA:   3'- -CGuUCGGU------------UCC------------GUUCGCUGCUGCCGG- -5'
12190 3' -55.4 NC_003309.1 + 53314 0.74 0.276458
Target:  5'- cGCAuccGCC-GGGCGGGCaACGACGGgCg -3'
miRNA:   3'- -CGUu--CGGuUCCGUUCGcUGCUGCCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.