miRNA display CGI


Results 21 - 40 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12190 3' -55.4 NC_003309.1 + 26347 0.68 0.559095
Target:  5'- -aGAGCgAcGcGCGcaCGACGACGGCCg -3'
miRNA:   3'- cgUUCGgUuC-CGUucGCUGCUGCCGG- -5'
12190 3' -55.4 NC_003309.1 + 27282 0.67 0.635762
Target:  5'- uCGAGCCuuuGGGCAAacGCGGCGuuuugagaaucGCaGCCu -3'
miRNA:   3'- cGUUCGGu--UCCGUU--CGCUGC-----------UGcCGG- -5'
12190 3' -55.4 NC_003309.1 + 28507 0.67 0.643473
Target:  5'- ---cGCCGgaaucAGGC-AGCGGCGAcccgcgcgccacgcCGGCCc -3'
miRNA:   3'- cguuCGGU-----UCCGuUCGCUGCU--------------GCCGG- -5'
12190 3' -55.4 NC_003309.1 + 29375 0.68 0.569938
Target:  5'- aCGAGCCAAGGCccuaacaGAUGGCGaGCg -3'
miRNA:   3'- cGUUCGGUUCCGuucg---CUGCUGC-CGg -5'
12190 3' -55.4 NC_003309.1 + 31478 0.67 0.624744
Target:  5'- ---cGCCGGcGGCGaaAGCGGCcACGGCg -3'
miRNA:   3'- cguuCGGUU-CCGU--UCGCUGcUGCCGg -5'
12190 3' -55.4 NC_003309.1 + 31534 0.75 0.218387
Target:  5'- gGCAAgcGCCAGcucgaacuacgccGGCcAGcCGACGGCGGCCu -3'
miRNA:   3'- -CGUU--CGGUU-------------CCGuUC-GCUGCUGCCGG- -5'
12190 3' -55.4 NC_003309.1 + 32060 0.67 0.640169
Target:  5'- ---cGCCGAGGCGcGCaaugcacgcuucgcuGGCGGCucGGCCg -3'
miRNA:   3'- cguuCGGUUCCGUuCG---------------CUGCUG--CCGG- -5'
12190 3' -55.4 NC_003309.1 + 32428 0.73 0.298139
Target:  5'- aGC-AGCCAagcgagagucgaAGGaaugcaccugccCGAGCGGCGACGGCUc -3'
miRNA:   3'- -CGuUCGGU------------UCC------------GUUCGCUGCUGCCGG- -5'
12190 3' -55.4 NC_003309.1 + 32833 0.68 0.602737
Target:  5'- uGCGGGCCGAaguccugugcGGCAA-CGACGAgucgcuggagaUGGCUg -3'
miRNA:   3'- -CGUUCGGUU----------CCGUUcGCUGCU-----------GCCGG- -5'
12190 3' -55.4 NC_003309.1 + 32925 0.67 0.613733
Target:  5'- gGCAAGCaaCAAcGGCuauGCGgccggacugcGCGACGGCa -3'
miRNA:   3'- -CGUUCG--GUU-CCGuu-CGC----------UGCUGCCGg -5'
12190 3' -55.4 NC_003309.1 + 32968 0.68 0.591767
Target:  5'- cGCGcGCUGAGGCGcgagAGCG-CGACGaCCc -3'
miRNA:   3'- -CGUuCGGUUCCGU----UCGCuGCUGCcGG- -5'
12190 3' -55.4 NC_003309.1 + 33617 0.72 0.337154
Target:  5'- gGC-AGCCGGGGCGacAGCuACGACaaugcgcuGGCCg -3'
miRNA:   3'- -CGuUCGGUUCCGU--UCGcUGCUG--------CCGG- -5'
12190 3' -55.4 NC_003309.1 + 34108 0.74 0.283542
Target:  5'- gGCAGGCCAAcauGCAGGUcuACGGCGuGCCg -3'
miRNA:   3'- -CGUUCGGUUc--CGUUCGc-UGCUGC-CGG- -5'
12190 3' -55.4 NC_003309.1 + 34545 0.71 0.406994
Target:  5'- cGCGAGCagcguaGCGAGCacccgucgauGugGGCGGCCg -3'
miRNA:   3'- -CGUUCGguuc--CGUUCG----------CugCUGCCGG- -5'
12190 3' -55.4 NC_003309.1 + 34855 0.72 0.370954
Target:  5'- aCGAGCacgucaucacCGAGGCAAaCGugGAgGGCCg -3'
miRNA:   3'- cGUUCG----------GUUCCGUUcGCugCUgCCGG- -5'
12190 3' -55.4 NC_003309.1 + 37060 0.69 0.505905
Target:  5'- uGC-AGCCGAGGCAGacGCGgcaaagcaagucGCGAUcGCCa -3'
miRNA:   3'- -CGuUCGGUUCCGUU--CGC------------UGCUGcCGG- -5'
12190 3' -55.4 NC_003309.1 + 37591 0.66 0.668755
Target:  5'- uGCAAcGCUAcGGCGA-CGACcGCGGCg -3'
miRNA:   3'- -CGUU-CGGUuCCGUUcGCUGcUGCCGg -5'
12190 3' -55.4 NC_003309.1 + 40163 0.68 0.591767
Target:  5'- cGCGAGCC---GUGAGaCGugGGCGGUa -3'
miRNA:   3'- -CGUUCGGuucCGUUC-GCugCUGCCGg -5'
12190 3' -55.4 NC_003309.1 + 41755 0.66 0.673138
Target:  5'- cGCcgauuGGCCcaugcgcugauaucaGAGGCGugAGCGcCGAUGGCUu -3'
miRNA:   3'- -CGu----UCGG---------------UUCCGU--UCGCuGCUGCCGG- -5'
12190 3' -55.4 NC_003309.1 + 43588 0.7 0.435423
Target:  5'- gGCAGGUaCGAGcGCAGGCcccaguACGGCGGCg -3'
miRNA:   3'- -CGUUCG-GUUC-CGUUCGc-----UGCUGCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.