miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12190 3' -55.4 NC_003309.1 + 52485 1.15 0.000361
Target:  5'- cGCAAGCCAAGGCAAGCGACGACGGCCg -3'
miRNA:   3'- -CGUUCGGUUCCGUUCGCUGCUGCCGG- -5'
12190 3' -55.4 NC_003309.1 + 6295 0.76 0.2022
Target:  5'- cGUGAGCCGAGGCAauaucGGCGuCGACGaGUUu -3'
miRNA:   3'- -CGUUCGGUUCCGU-----UCGCuGCUGC-CGG- -5'
12190 3' -55.4 NC_003309.1 + 31534 0.75 0.218387
Target:  5'- gGCAAgcGCCAGcucgaacuacgccGGCcAGcCGACGGCGGCCu -3'
miRNA:   3'- -CGUU--CGGUU-------------CCGuUC-GCUGCUGCCGG- -5'
12190 3' -55.4 NC_003309.1 + 5060 0.74 0.269516
Target:  5'- cGCGgcGGCCGGuGCc-GCGACGGCGGUCg -3'
miRNA:   3'- -CGU--UCGGUUcCGuuCGCUGCUGCCGG- -5'
12190 3' -55.4 NC_003309.1 + 53314 0.74 0.276458
Target:  5'- cGCAuccGCC-GGGCGGGCaACGACGGgCg -3'
miRNA:   3'- -CGUu--CGGuUCCGUUCGcUGCUGCCgG- -5'
12190 3' -55.4 NC_003309.1 + 34108 0.74 0.283542
Target:  5'- gGCAGGCCAAcauGCAGGUcuACGGCGuGCCg -3'
miRNA:   3'- -CGUUCGGUUc--CGUUCGc-UGCUGC-CGG- -5'
12190 3' -55.4 NC_003309.1 + 32428 0.73 0.298139
Target:  5'- aGC-AGCCAagcgagagucgaAGGaaugcaccugccCGAGCGGCGACGGCUc -3'
miRNA:   3'- -CGuUCGGU------------UCC------------GUUCGCUGCUGCCGG- -5'
12190 3' -55.4 NC_003309.1 + 7890 0.73 0.313311
Target:  5'- gGCAAGCCGAucGGCGucGGUGAaCGuCGGCg -3'
miRNA:   3'- -CGUUCGGUU--CCGU--UCGCU-GCuGCCGg -5'
12190 3' -55.4 NC_003309.1 + 33617 0.72 0.337154
Target:  5'- gGC-AGCCGGGGCGacAGCuACGACaaugcgcuGGCCg -3'
miRNA:   3'- -CGuUCGGUUCCGU--UCGcUGCUG--------CCGG- -5'
12190 3' -55.4 NC_003309.1 + 34855 0.72 0.370954
Target:  5'- aCGAGCacgucaucacCGAGGCAAaCGugGAgGGCCg -3'
miRNA:   3'- cGUUCG----------GUUCCGUUcGCugCUgCCGG- -5'
12190 3' -55.4 NC_003309.1 + 34545 0.71 0.406994
Target:  5'- cGCGAGCagcguaGCGAGCacccgucgauGugGGCGGCCg -3'
miRNA:   3'- -CGUUCGguuc--CGUUCG----------CugCUGCCGG- -5'
12190 3' -55.4 NC_003309.1 + 10681 0.71 0.425818
Target:  5'- cGCGgcGGCCGucucGCGGGCGAUGAUcGCCg -3'
miRNA:   3'- -CGU--UCGGUuc--CGUUCGCUGCUGcCGG- -5'
12190 3' -55.4 NC_003309.1 + 43588 0.7 0.435423
Target:  5'- gGCAGGUaCGAGcGCAGGCcccaguACGGCGGCg -3'
miRNA:   3'- -CGUUCG-GUUC-CGUUCGc-----UGCUGCCGg -5'
12190 3' -55.4 NC_003309.1 + 18847 0.7 0.446131
Target:  5'- -gAAGCgCGcGGCAAGCGucaccgugucaccguUGACGGCCu -3'
miRNA:   3'- cgUUCG-GUuCCGUUCGCu--------------GCUGCCGG- -5'
12190 3' -55.4 NC_003309.1 + 3966 0.7 0.45401
Target:  5'- uGCGA-CCAAGGCAcgucGGCGcuccgauGCGGCaGCCa -3'
miRNA:   3'- -CGUUcGGUUCCGU----UCGC-------UGCUGcCGG- -5'
12190 3' -55.4 NC_003309.1 + 9055 0.7 0.464966
Target:  5'- cCAAGCCGcAGcGCGAGCGACaucagGAagcggaGGCCu -3'
miRNA:   3'- cGUUCGGU-UC-CGUUCGCUG-----CUg-----CCGG- -5'
12190 3' -55.4 NC_003309.1 + 21642 0.7 0.485229
Target:  5'- --cGGUCAAcGUAAGCGACGACGcGaCCg -3'
miRNA:   3'- cguUCGGUUcCGUUCGCUGCUGC-C-GG- -5'
12190 3' -55.4 NC_003309.1 + 11570 0.69 0.495518
Target:  5'- cGCAcGCCGucGGC-AGCGuccCGuGCGGCCa -3'
miRNA:   3'- -CGUuCGGUu-CCGuUCGCu--GC-UGCCGG- -5'
12190 3' -55.4 NC_003309.1 + 37060 0.69 0.505905
Target:  5'- uGC-AGCCGAGGCAGacGCGgcaaagcaagucGCGAUcGCCa -3'
miRNA:   3'- -CGuUCGGUUCCGUU--CGC------------UGCUGcCGG- -5'
12190 3' -55.4 NC_003309.1 + 26347 0.68 0.559095
Target:  5'- -aGAGCgAcGcGCGcaCGACGACGGCCg -3'
miRNA:   3'- cgUUCGgUuC-CGUucGCUGCUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.