Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12190 | 3' | -55.4 | NC_003309.1 | + | 40163 | 0.68 | 0.591767 |
Target: 5'- cGCGAGCC---GUGAGaCGugGGCGGUa -3' miRNA: 3'- -CGUUCGGuucCGUUC-GCugCUGCCGg -5' |
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12190 | 3' | -55.4 | NC_003309.1 | + | 32968 | 0.68 | 0.591767 |
Target: 5'- cGCGcGCUGAGGCGcgagAGCG-CGACGaCCc -3' miRNA: 3'- -CGUuCGGUUCCGU----UCGCuGCUGCcGG- -5' |
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12190 | 3' | -55.4 | NC_003309.1 | + | 17497 | 0.68 | 0.569938 |
Target: 5'- gGCAcGCCGAcGCcGGCcucacgcuCGACGGCCg -3' miRNA: 3'- -CGUuCGGUUcCGuUCGcu------GCUGCCGG- -5' |
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12190 | 3' | -55.4 | NC_003309.1 | + | 29375 | 0.68 | 0.569938 |
Target: 5'- aCGAGCCAAGGCccuaacaGAUGGCGaGCg -3' miRNA: 3'- cGUUCGGUUCCGuucg---CUGCUGC-CGg -5' |
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12190 | 3' | -55.4 | NC_003309.1 | + | 26347 | 0.68 | 0.559095 |
Target: 5'- -aGAGCgAcGcGCGcaCGACGACGGCCg -3' miRNA: 3'- cgUUCGgUuC-CGUucGCUGCUGCCGG- -5' |
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12190 | 3' | -55.4 | NC_003309.1 | + | 5787 | 0.68 | 0.559095 |
Target: 5'- cGCAAGCCuucGAGG-AAGCGgaacgugcGCGG-GGCCa -3' miRNA: 3'- -CGUUCGG---UUCCgUUCGC--------UGCUgCCGG- -5' |
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12190 | 3' | -55.4 | NC_003309.1 | + | 37060 | 0.69 | 0.505905 |
Target: 5'- uGC-AGCCGAGGCAGacGCGgcaaagcaagucGCGAUcGCCa -3' miRNA: 3'- -CGuUCGGUUCCGUU--CGC------------UGCUGcCGG- -5' |
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12190 | 3' | -55.4 | NC_003309.1 | + | 11570 | 0.69 | 0.495518 |
Target: 5'- cGCAcGCCGucGGC-AGCGuccCGuGCGGCCa -3' miRNA: 3'- -CGUuCGGUu-CCGuUCGCu--GC-UGCCGG- -5' |
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12190 | 3' | -55.4 | NC_003309.1 | + | 21642 | 0.7 | 0.485229 |
Target: 5'- --cGGUCAAcGUAAGCGACGACGcGaCCg -3' miRNA: 3'- cguUCGGUUcCGUUCGCUGCUGC-C-GG- -5' |
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12190 | 3' | -55.4 | NC_003309.1 | + | 9055 | 0.7 | 0.464966 |
Target: 5'- cCAAGCCGcAGcGCGAGCGACaucagGAagcggaGGCCu -3' miRNA: 3'- cGUUCGGU-UC-CGUUCGCUG-----CUg-----CCGG- -5' |
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12190 | 3' | -55.4 | NC_003309.1 | + | 3966 | 0.7 | 0.45401 |
Target: 5'- uGCGA-CCAAGGCAcgucGGCGcuccgauGCGGCaGCCa -3' miRNA: 3'- -CGUUcGGUUCCGU----UCGC-------UGCUGcCGG- -5' |
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12190 | 3' | -55.4 | NC_003309.1 | + | 18847 | 0.7 | 0.446131 |
Target: 5'- -gAAGCgCGcGGCAAGCGucaccgugucaccguUGACGGCCu -3' miRNA: 3'- cgUUCG-GUuCCGUUCGCu--------------GCUGCCGG- -5' |
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12190 | 3' | -55.4 | NC_003309.1 | + | 43588 | 0.7 | 0.435423 |
Target: 5'- gGCAGGUaCGAGcGCAGGCcccaguACGGCGGCg -3' miRNA: 3'- -CGUUCG-GUUC-CGUUCGc-----UGCUGCCGg -5' |
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12190 | 3' | -55.4 | NC_003309.1 | + | 10681 | 0.71 | 0.425818 |
Target: 5'- cGCGgcGGCCGucucGCGGGCGAUGAUcGCCg -3' miRNA: 3'- -CGU--UCGGUuc--CGUUCGCUGCUGcCGG- -5' |
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12190 | 3' | -55.4 | NC_003309.1 | + | 34545 | 0.71 | 0.406994 |
Target: 5'- cGCGAGCagcguaGCGAGCacccgucgauGugGGCGGCCg -3' miRNA: 3'- -CGUUCGguuc--CGUUCG----------CugCUGCCGG- -5' |
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12190 | 3' | -55.4 | NC_003309.1 | + | 34855 | 0.72 | 0.370954 |
Target: 5'- aCGAGCacgucaucacCGAGGCAAaCGugGAgGGCCg -3' miRNA: 3'- cGUUCG----------GUUCCGUUcGCugCUgCCGG- -5' |
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12190 | 3' | -55.4 | NC_003309.1 | + | 33617 | 0.72 | 0.337154 |
Target: 5'- gGC-AGCCGGGGCGacAGCuACGACaaugcgcuGGCCg -3' miRNA: 3'- -CGuUCGGUUCCGU--UCGcUGCUG--------CCGG- -5' |
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12190 | 3' | -55.4 | NC_003309.1 | + | 7890 | 0.73 | 0.313311 |
Target: 5'- gGCAAGCCGAucGGCGucGGUGAaCGuCGGCg -3' miRNA: 3'- -CGUUCGGUU--CCGU--UCGCU-GCuGCCGg -5' |
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12190 | 3' | -55.4 | NC_003309.1 | + | 32428 | 0.73 | 0.298139 |
Target: 5'- aGC-AGCCAagcgagagucgaAGGaaugcaccugccCGAGCGGCGACGGCUc -3' miRNA: 3'- -CGuUCGGU------------UCC------------GUUCGCUGCUGCCGG- -5' |
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12190 | 3' | -55.4 | NC_003309.1 | + | 34108 | 0.74 | 0.283542 |
Target: 5'- gGCAGGCCAAcauGCAGGUcuACGGCGuGCCg -3' miRNA: 3'- -CGUUCGGUUc--CGUUCGc-UGCUGC-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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