miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12190 5' -54.7 NC_003309.1 + 21999 0.67 0.649183
Target:  5'- aCCGGCucCGC-GUGCUCGAugagccguUGCUcGAGCc -3'
miRNA:   3'- -GGUCG--GCGaCACGAGCU--------ACGA-CUUGa -5'
12190 5' -54.7 NC_003309.1 + 48705 0.68 0.626899
Target:  5'- gCCAauGCCGC-GUGCgCGAUcGCUGcGCUg -3'
miRNA:   3'- -GGU--CGGCGaCACGaGCUA-CGACuUGA- -5'
12190 5' -54.7 NC_003309.1 + 3402 0.68 0.615759
Target:  5'- aCUGGa-GCgacugGUGCUCGAuguUGCUGAACg -3'
miRNA:   3'- -GGUCggCGa----CACGAGCU---ACGACUUGa -5'
12190 5' -54.7 NC_003309.1 + 51130 0.7 0.465196
Target:  5'- uCCAGCCGCUc-GCucaUCGAUuGCUGAAUc -3'
miRNA:   3'- -GGUCGGCGAcaCG---AGCUA-CGACUUGa -5'
12190 5' -54.7 NC_003309.1 + 52451 1.1 0.000822
Target:  5'- cCCAGCCGCUGUGCUCGAUGCUGAACUg -3'
miRNA:   3'- -GGUCGGCGACACGAGCUACGACUUGA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.