miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12192 3' -49.6 NC_003309.1 + 154 0.66 0.958563
Target:  5'- cGCGcCGUCGGcuugGGUUUUCUGcccCGGCCc -3'
miRNA:   3'- -UGUaGCAGCU----UUAGAAGACac-GCCGG- -5'
12192 3' -49.6 NC_003309.1 + 32833 0.66 0.95432
Target:  5'- uGCGg-GcCGAAGUC--CUGUGCGGCa -3'
miRNA:   3'- -UGUagCaGCUUUAGaaGACACGCCGg -5'
12192 3' -49.6 NC_003309.1 + 11568 0.67 0.922753
Target:  5'- cACGcCGUCGGcagCgUCccGUGCGGCCa -3'
miRNA:   3'- -UGUaGCAGCUuuaGaAGa-CACGCCGG- -5'
12192 3' -49.6 NC_003309.1 + 52656 0.71 0.736225
Target:  5'- gGCcgCGUCGuAAUCgu-UGUGCuGGCCg -3'
miRNA:   3'- -UGuaGCAGCuUUAGaagACACG-CCGG- -5'
12192 3' -49.6 NC_003309.1 + 19497 0.73 0.611921
Target:  5'- cGCGUCGUCGcGAU--UCggcGUGCGGCUg -3'
miRNA:   3'- -UGUAGCAGCuUUAgaAGa--CACGCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.