miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12193 5' -53.9 NC_003309.1 + 4792 0.66 0.815469
Target:  5'- cGCCCGAAGGCGgCa-GUGCuugACUGa -3'
miRNA:   3'- -CGGGCUUCUGUgGcaCGCGuuaUGGC- -5'
12193 5' -53.9 NC_003309.1 + 35047 0.66 0.815469
Target:  5'- uCCCGAccgaGCGCC-UGUGCGAcGCCGa -3'
miRNA:   3'- cGGGCUuc--UGUGGcACGCGUUaUGGC- -5'
12193 5' -53.9 NC_003309.1 + 28452 0.66 0.814531
Target:  5'- uGCCCGAGGuuGUCGUcGCGCAcguucauGUGCUa -3'
miRNA:   3'- -CGGGCUUCugUGGCA-CGCGU-------UAUGGc -5'
12193 5' -53.9 NC_003309.1 + 8474 0.66 0.806
Target:  5'- aGCCCauuGAcGACGCCGcccacguguacUGaCGCAccAUGCCGa -3'
miRNA:   3'- -CGGG---CUuCUGUGGC-----------AC-GCGU--UAUGGC- -5'
12193 5' -53.9 NC_003309.1 + 27760 0.66 0.806
Target:  5'- cGCUgGGAGucgccagacgacGCGCCGcccgGCGCAucGCCGa -3'
miRNA:   3'- -CGGgCUUC------------UGUGGCa---CGCGUuaUGGC- -5'
12193 5' -53.9 NC_003309.1 + 5783 0.66 0.776533
Target:  5'- aGCCuuCGAGGAagcggaaCGUGCGCGggGCCa -3'
miRNA:   3'- -CGG--GCUUCUgug----GCACGCGUuaUGGc -5'
12193 5' -53.9 NC_003309.1 + 13101 0.68 0.70304
Target:  5'- cGCCCGGcugcGACACCacugcgGCGCGG-ACCa -3'
miRNA:   3'- -CGGGCUu---CUGUGGca----CGCGUUaUGGc -5'
12193 5' -53.9 NC_003309.1 + 5337 0.68 0.70304
Target:  5'- cGUUCGAGagcGGCAgCGUGCGCGc-GCCGa -3'
miRNA:   3'- -CGGGCUU---CUGUgGCACGCGUuaUGGC- -5'
12193 5' -53.9 NC_003309.1 + 30529 0.68 0.692169
Target:  5'- cGCCUGAuGACACCG-GC-CGAUcucacagucgucACCGg -3'
miRNA:   3'- -CGGGCUuCUGUGGCaCGcGUUA------------UGGC- -5'
12193 5' -53.9 NC_003309.1 + 16724 0.68 0.68124
Target:  5'- aGCCCGGAaucaGCACCGacaGCGCGcgcACCGc -3'
miRNA:   3'- -CGGGCUUc---UGUGGCa--CGCGUua-UGGC- -5'
12193 5' -53.9 NC_003309.1 + 2593 0.68 0.670264
Target:  5'- uGCCCGGAGu--CCGacCGCGAgcUACCGa -3'
miRNA:   3'- -CGGGCUUCuguGGCacGCGUU--AUGGC- -5'
12193 5' -53.9 NC_003309.1 + 18785 0.68 0.659251
Target:  5'- uGCCCGAcggcaAGAuCGCCGUGaaaCGAUcGCCGg -3'
miRNA:   3'- -CGGGCU-----UCU-GUGGCACgc-GUUA-UGGC- -5'
12193 5' -53.9 NC_003309.1 + 18503 0.69 0.626103
Target:  5'- uCuuGAuGACGCCGUaucGCGCGAUcCCGu -3'
miRNA:   3'- cGggCUuCUGUGGCA---CGCGUUAuGGC- -5'
12193 5' -53.9 NC_003309.1 + 4160 0.69 0.604014
Target:  5'- aGCUCGAAcGCGCCGgucGCGCucccGCCGu -3'
miRNA:   3'- -CGGGCUUcUGUGGCa--CGCGuua-UGGC- -5'
12193 5' -53.9 NC_003309.1 + 130 0.71 0.527917
Target:  5'- cCCCGGcccGGCACUGU-CGCGAUACCc -3'
miRNA:   3'- cGGGCUu--CUGUGGCAcGCGUUAUGGc -5'
12193 5' -53.9 NC_003309.1 + 31426 0.71 0.527917
Target:  5'- cGCUCGcuGGCgACCaGUGCGCAGccGCCGg -3'
miRNA:   3'- -CGGGCuuCUG-UGG-CACGCGUUa-UGGC- -5'
12193 5' -53.9 NC_003309.1 + 22475 0.73 0.39819
Target:  5'- cGCCgacgCGgcGGCAUCGUGCGCGGcgaucgcacgcUGCCGg -3'
miRNA:   3'- -CGG----GCuuCUGUGGCACGCGUU-----------AUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.