Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12193 | 5' | -53.9 | NC_003309.1 | + | 35047 | 0.66 | 0.815469 |
Target: 5'- uCCCGAccgaGCGCC-UGUGCGAcGCCGa -3' miRNA: 3'- cGGGCUuc--UGUGGcACGCGUUaUGGC- -5' |
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12193 | 5' | -53.9 | NC_003309.1 | + | 4792 | 0.66 | 0.815469 |
Target: 5'- cGCCCGAAGGCGgCa-GUGCuugACUGa -3' miRNA: 3'- -CGGGCUUCUGUgGcaCGCGuuaUGGC- -5' |
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12193 | 5' | -53.9 | NC_003309.1 | + | 28452 | 0.66 | 0.814531 |
Target: 5'- uGCCCGAGGuuGUCGUcGCGCAcguucauGUGCUa -3' miRNA: 3'- -CGGGCUUCugUGGCA-CGCGU-------UAUGGc -5' |
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12193 | 5' | -53.9 | NC_003309.1 | + | 8474 | 0.66 | 0.806 |
Target: 5'- aGCCCauuGAcGACGCCGcccacguguacUGaCGCAccAUGCCGa -3' miRNA: 3'- -CGGG---CUuCUGUGGC-----------AC-GCGU--UAUGGC- -5' |
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12193 | 5' | -53.9 | NC_003309.1 | + | 27760 | 0.66 | 0.806 |
Target: 5'- cGCUgGGAGucgccagacgacGCGCCGcccgGCGCAucGCCGa -3' miRNA: 3'- -CGGgCUUC------------UGUGGCa---CGCGUuaUGGC- -5' |
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12193 | 5' | -53.9 | NC_003309.1 | + | 5783 | 0.66 | 0.776533 |
Target: 5'- aGCCuuCGAGGAagcggaaCGUGCGCGggGCCa -3' miRNA: 3'- -CGG--GCUUCUgug----GCACGCGUuaUGGc -5' |
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12193 | 5' | -53.9 | NC_003309.1 | + | 13101 | 0.68 | 0.70304 |
Target: 5'- cGCCCGGcugcGACACCacugcgGCGCGG-ACCa -3' miRNA: 3'- -CGGGCUu---CUGUGGca----CGCGUUaUGGc -5' |
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12193 | 5' | -53.9 | NC_003309.1 | + | 5337 | 0.68 | 0.70304 |
Target: 5'- cGUUCGAGagcGGCAgCGUGCGCGc-GCCGa -3' miRNA: 3'- -CGGGCUU---CUGUgGCACGCGUuaUGGC- -5' |
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12193 | 5' | -53.9 | NC_003309.1 | + | 30529 | 0.68 | 0.692169 |
Target: 5'- cGCCUGAuGACACCG-GC-CGAUcucacagucgucACCGg -3' miRNA: 3'- -CGGGCUuCUGUGGCaCGcGUUA------------UGGC- -5' |
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12193 | 5' | -53.9 | NC_003309.1 | + | 16724 | 0.68 | 0.68124 |
Target: 5'- aGCCCGGAaucaGCACCGacaGCGCGcgcACCGc -3' miRNA: 3'- -CGGGCUUc---UGUGGCa--CGCGUua-UGGC- -5' |
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12193 | 5' | -53.9 | NC_003309.1 | + | 2593 | 0.68 | 0.670264 |
Target: 5'- uGCCCGGAGu--CCGacCGCGAgcUACCGa -3' miRNA: 3'- -CGGGCUUCuguGGCacGCGUU--AUGGC- -5' |
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12193 | 5' | -53.9 | NC_003309.1 | + | 18785 | 0.68 | 0.659251 |
Target: 5'- uGCCCGAcggcaAGAuCGCCGUGaaaCGAUcGCCGg -3' miRNA: 3'- -CGGGCU-----UCU-GUGGCACgc-GUUA-UGGC- -5' |
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12193 | 5' | -53.9 | NC_003309.1 | + | 18503 | 0.69 | 0.626103 |
Target: 5'- uCuuGAuGACGCCGUaucGCGCGAUcCCGu -3' miRNA: 3'- cGggCUuCUGUGGCA---CGCGUUAuGGC- -5' |
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12193 | 5' | -53.9 | NC_003309.1 | + | 4160 | 0.69 | 0.604014 |
Target: 5'- aGCUCGAAcGCGCCGgucGCGCucccGCCGu -3' miRNA: 3'- -CGGGCUUcUGUGGCa--CGCGuua-UGGC- -5' |
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12193 | 5' | -53.9 | NC_003309.1 | + | 130 | 0.71 | 0.527917 |
Target: 5'- cCCCGGcccGGCACUGU-CGCGAUACCc -3' miRNA: 3'- cGGGCUu--CUGUGGCAcGCGUUAUGGc -5' |
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12193 | 5' | -53.9 | NC_003309.1 | + | 31426 | 0.71 | 0.527917 |
Target: 5'- cGCUCGcuGGCgACCaGUGCGCAGccGCCGg -3' miRNA: 3'- -CGGGCuuCUG-UGG-CACGCGUUa-UGGC- -5' |
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12193 | 5' | -53.9 | NC_003309.1 | + | 22475 | 0.73 | 0.39819 |
Target: 5'- cGCCgacgCGgcGGCAUCGUGCGCGGcgaucgcacgcUGCCGg -3' miRNA: 3'- -CGG----GCuuCUGUGGCACGCGUU-----------AUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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