miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12195 3' -54.4 NC_003309.1 + 46442 0.66 0.718445
Target:  5'- -uUCGGCGGCcucCUG-UGCGCuuuccgcgUCGUCAa -3'
miRNA:   3'- uuAGCUGCCGc--GACaACGCG--------AGUAGU- -5'
12195 3' -54.4 NC_003309.1 + 22642 0.68 0.572976
Target:  5'- --cCGGCGGCGCUGgaaGCGC-CGggCAc -3'
miRNA:   3'- uuaGCUGCCGCGACaa-CGCGaGUa-GU- -5'
12195 3' -54.4 NC_003309.1 + 7402 0.69 0.528925
Target:  5'- -uUCGGCGcGCGCUuacGCGcCUCGUCAc -3'
miRNA:   3'- uuAGCUGC-CGCGAcaaCGC-GAGUAGU- -5'
12195 3' -54.4 NC_003309.1 + 28413 0.7 0.496723
Target:  5'- uAAUCGGCGGCGCU-UUGCcCUCGg-- -3'
miRNA:   3'- -UUAGCUGCCGCGAcAACGcGAGUagu -5'
12195 3' -54.4 NC_003309.1 + 1258 0.72 0.351806
Target:  5'- -uUCGuacagcGCGGCGCUGUcGUGCUCGUg- -3'
miRNA:   3'- uuAGC------UGCCGCGACAaCGCGAGUAgu -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.