miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12197 3' -47.4 NC_003309.1 + 923 0.66 0.989707
Target:  5'- -aGCUUUcUCGAAacCGGCgCUUGCCGg -3'
miRNA:   3'- caUGAAGuAGCUUauGUUG-GAGCGGC- -5'
12197 3' -47.4 NC_003309.1 + 22124 0.66 0.98637
Target:  5'- -cGCccgCAUUGA--ACcGCCUCGCCGu -3'
miRNA:   3'- caUGaa-GUAGCUuaUGuUGGAGCGGC- -5'
12197 3' -47.4 NC_003309.1 + 46227 0.68 0.960457
Target:  5'- uUGC-UCGUCGGGcgACAGCUUCGCa- -3'
miRNA:   3'- cAUGaAGUAGCUUa-UGUUGGAGCGgc -5'
12197 3' -47.4 NC_003309.1 + 22502 0.69 0.94193
Target:  5'- cGUGgUUCguugGUCGAcgGCGGCCacCGCCGa -3'
miRNA:   3'- -CAUgAAG----UAGCUuaUGUUGGa-GCGGC- -5'
12197 3' -47.4 NC_003309.1 + 10526 0.7 0.918532
Target:  5'- uGUACUUgAUCGAGc-CGGCCgucaaCGCCGa -3'
miRNA:   3'- -CAUGAAgUAGCUUauGUUGGa----GCGGC- -5'
12197 3' -47.4 NC_003309.1 + 7633 0.7 0.904981
Target:  5'- gGUGCga-AUCGcccccuCGGCCUCGCCGa -3'
miRNA:   3'- -CAUGaagUAGCuuau--GUUGGAGCGGC- -5'
12197 3' -47.4 NC_003309.1 + 6255 0.73 0.789763
Target:  5'- aUGCUcgUCGUCGAAcccUGCGAUgUCGCCu -3'
miRNA:   3'- cAUGA--AGUAGCUU---AUGUUGgAGCGGc -5'
12197 3' -47.4 NC_003309.1 + 47544 0.73 0.768651
Target:  5'- -cGCUUCGUCG-AUGCAGUC-CGCCGg -3'
miRNA:   3'- caUGAAGUAGCuUAUGUUGGaGCGGC- -5'
12197 3' -47.4 NC_003309.1 + 10780 0.74 0.713353
Target:  5'- -cGCUUUGUCGAucGUGCcuuGCUUCGCCGc -3'
miRNA:   3'- caUGAAGUAGCU--UAUGu--UGGAGCGGC- -5'
12197 3' -47.4 NC_003309.1 + 2754 0.75 0.678989
Target:  5'- cGUACUUCAgaaUCGAAUACAGcgggugguCCgUUGCCGg -3'
miRNA:   3'- -CAUGAAGU---AGCUUAUGUU--------GG-AGCGGC- -5'
12197 3' -47.4 NC_003309.1 + 7523 0.75 0.667417
Target:  5'- cGUugUUCggCGAAU-CAGCCUUGCCc -3'
miRNA:   3'- -CAugAAGuaGCUUAuGUUGGAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.