Results 41 - 52 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
122 | 3' | -61.3 | AC_000006.1 | + | 24624 | 0.66 | 0.304191 |
Target: 5'- -gGCCGUGAgauCCGCGuGCU---GCGGGCg -3' miRNA: 3'- ggUGGCGCU---GGCGC-CGGcauCGUCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 15268 | 0.66 | 0.304191 |
Target: 5'- gCGCa-CGGCgGCGGCgGUGGCAGuccGCc -3' miRNA: 3'- gGUGgcGCUGgCGCCGgCAUCGUC---CG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 16913 | 0.66 | 0.319288 |
Target: 5'- gCCGCCGCGAUuaUGgGGauGagcGCGGGCa -3' miRNA: 3'- -GGUGGCGCUG--GCgCCggCau-CGUCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 8705 | 0.66 | 0.319288 |
Target: 5'- cUCGCCGCcACCGUGGagCGc-GCGGGUc -3' miRNA: 3'- -GGUGGCGcUGGCGCCg-GCauCGUCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 12240 | 0.66 | 0.319288 |
Target: 5'- aUCAgCGCG-CUGCGGCUGaUGGUgaccgAGGUg -3' miRNA: 3'- -GGUgGCGCuGGCGCCGGC-AUCG-----UCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 8327 | 0.66 | 0.319288 |
Target: 5'- uCC-CgGCGGCaGCGGCgGUuccggccccGCGGGCa -3' miRNA: 3'- -GGuGgCGCUGgCGCCGgCAu--------CGUCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 8118 | 0.66 | 0.327046 |
Target: 5'- cCCGCCGCG-CCGagaucuggaccUGGCUcccgcGCGGGCu -3' miRNA: 3'- -GGUGGCGCuGGC-----------GCCGGcau--CGUCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 17304 | 0.66 | 0.327046 |
Target: 5'- -aGCCGUcugGAcCCGCGGCCGcccacGguGGUg -3' miRNA: 3'- ggUGGCG---CU-GGCGCCGGCau---CguCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 10000 | 0.66 | 0.327046 |
Target: 5'- gCCGgCGCGcCCGgGGCCaGguccucgAGCAugaGGCg -3' miRNA: 3'- -GGUgGCGCuGGCgCCGG-Ca------UCGU---CCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 17636 | 0.66 | 0.334941 |
Target: 5'- aCGCgGCGcACgGCGGUCGccaccggAGgGGGCu -3' miRNA: 3'- gGUGgCGC-UGgCGCCGGCa------UCgUCCG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 9959 | 0.66 | 0.334941 |
Target: 5'- -aAgUGCGGCgGCGGCUGgcGguGaGCg -3' miRNA: 3'- ggUgGCGCUGgCGCCGGCauCguC-CG- -5' |
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122 | 3' | -61.3 | AC_000006.1 | + | 131 | 0.66 | 0.340551 |
Target: 5'- gUCGCCGCGGaggCGUGGCCuagcccggaagcaaGUcGCGGGg -3' miRNA: 3'- -GGUGGCGCUg--GCGCCGG--------------CAuCGUCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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