miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
122 5' -57 AC_000006.1 + 17077 0.66 0.444395
Target:  5'- cGGCCGcguGCCgu-GCCGCGGAgcCAGGGAc -3'
miRNA:   3'- aUCGGU---CGGuguCGGUGUCU--GUCUCU- -5'
122 5' -57 AC_000006.1 + 11885 0.66 0.443374
Target:  5'- uUAGacaaCAGCCGCAgGCCaACAGACucucggccauucuGGAGGc -3'
miRNA:   3'- -AUCg---GUCGGUGU-CGG-UGUCUG-------------UCUCU- -5'
122 5' -57 AC_000006.1 + 15218 0.66 0.433238
Target:  5'- gAGCgcggaagUGGCCGCGGaCGCGGACGGGGu -3'
miRNA:   3'- aUCG-------GUCGGUGUCgGUGUCUGUCUCu -5'
122 5' -57 AC_000006.1 + 10993 0.66 0.424231
Target:  5'- cGGCCaaccuGGUgACGGCCuacgaGCAGACGGuGAa -3'
miRNA:   3'- aUCGG-----UCGgUGUCGG-----UGUCUGUCuCU- -5'
122 5' -57 AC_000006.1 + 13178 0.66 0.414356
Target:  5'- cGGCCGGCuCACccuGCCGCuGuucACAGAGc -3'
miRNA:   3'- aUCGGUCG-GUGu--CGGUGuC---UGUCUCu -5'
122 5' -57 AC_000006.1 + 8330 0.66 0.404623
Target:  5'- cGGCggCAGCgGCGGuuccggccCCGCGGGCAGGGGc -3'
miRNA:   3'- aUCG--GUCGgUGUC--------GGUGUCUGUCUCU- -5'
122 5' -57 AC_000006.1 + 2701 0.67 0.376309
Target:  5'- aAGCCgaaaaAGUCGCAGCCAU--GCAGGGu -3'
miRNA:   3'- aUCGG-----UCGGUGUCGGUGucUGUCUCu -5'
122 5' -57 AC_000006.1 + 24318 0.67 0.376309
Target:  5'- uUGGCCAGCUgcaagagguaGCAGuggcuCCACAGcgGCGGGGGa -3'
miRNA:   3'- -AUCGGUCGG----------UGUC-----GGUGUC--UGUCUCU- -5'
122 5' -57 AC_000006.1 + 31092 0.68 0.332176
Target:  5'- cAGCCAGUUugAGUgACAGGacccCAGGGGg -3'
miRNA:   3'- aUCGGUCGGugUCGgUGUCU----GUCUCU- -5'
122 5' -57 AC_000006.1 + 13187 0.69 0.295037
Target:  5'- cAGCCGccgcgggucaagaacGCCAUGGCCAauaacgGGAUAGAGAg -3'
miRNA:   3'- aUCGGU---------------CGGUGUCGGUg-----UCUGUCUCU- -5'
122 5' -57 AC_000006.1 + 32972 0.69 0.291965
Target:  5'- aAGCCAGCagCACAugguaauCCACGGACAGAa- -3'
miRNA:   3'- aUCGGUCG--GUGUc------GGUGUCUGUCUcu -5'
122 5' -57 AC_000006.1 + 6210 0.7 0.242211
Target:  5'- -cGCCAGCCGCGGUUAU--GCAGGGu -3'
miRNA:   3'- auCGGUCGGUGUCGGUGucUGUCUCu -5'
122 5' -57 AC_000006.1 + 17666 0.7 0.235709
Target:  5'- -uGCCAGuUCugGGCCuggcgGCGGGCGGGGAc -3'
miRNA:   3'- auCGGUC-GGugUCGG-----UGUCUGUCUCU- -5'
122 5' -57 AC_000006.1 + 17376 0.71 0.211154
Target:  5'- aAG-CGGCCGCGGCCAgAuGCGGAGGa -3'
miRNA:   3'- aUCgGUCGGUGUCGGUgUcUGUCUCU- -5'
122 5' -57 AC_000006.1 + 10715 0.71 0.199723
Target:  5'- -cGCCuGCUACGGCCGCGGucGCGGuGGu -3'
miRNA:   3'- auCGGuCGGUGUCGGUGUC--UGUCuCU- -5'
122 5' -57 AC_000006.1 + 3631 0.75 0.105897
Target:  5'- cAGCCgcggcAGCCGCAGCCGCcauGACAGcGAc -3'
miRNA:   3'- aUCGG-----UCGGUGUCGGUGu--CUGUCuCU- -5'
122 5' -57 AC_000006.1 + 10688 1.07 0.000388
Target:  5'- cUAGCCAGCCACAGCCACAGACAGAGAu -3'
miRNA:   3'- -AUCGGUCGGUGUCGGUGUCUGUCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.