Results 1 - 19 of 19 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12200 | 3' | -55.6 | NC_003309.1 | + | 3315 | 0.66 | 0.670264 |
Target: 5'- uGUCGA-GCGCGGAaaggcgcaGCGCGUCGaucAGCg -3' miRNA: 3'- -CAGUUcCGCGCUUa-------CGCGCGGCa--UCG- -5' |
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12200 | 3' | -55.6 | NC_003309.1 | + | 9542 | 0.66 | 0.670264 |
Target: 5'- uUCGcGGauCGAAcUGCGCGCCGcgucgAGCg -3' miRNA: 3'- cAGUuCCgcGCUU-ACGCGCGGCa----UCG- -5' |
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12200 | 3' | -55.6 | NC_003309.1 | + | 25867 | 0.66 | 0.670264 |
Target: 5'- cGUCGGGGCGcCGAAca-GCaCCGgcGCg -3' miRNA: 3'- -CAGUUCCGC-GCUUacgCGcGGCauCG- -5' |
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12200 | 3' | -55.6 | NC_003309.1 | + | 37321 | 0.66 | 0.66366 |
Target: 5'- cGUCuaccuGcGCGCGAucGUGCGCgacgcccugaaucucGCCGgcGCg -3' miRNA: 3'- -CAGuu---C-CGCGCU--UACGCG---------------CGGCauCG- -5' |
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12200 | 3' | -55.6 | NC_003309.1 | + | 41732 | 0.67 | 0.63716 |
Target: 5'- aUCAgAGGCGUGA----GCGCCGaUGGCu -3' miRNA: 3'- cAGU-UCCGCGCUuacgCGCGGC-AUCG- -5' |
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12200 | 3' | -55.6 | NC_003309.1 | + | 13637 | 0.67 | 0.615051 |
Target: 5'- aGUCcgcGGGCGCGAAgcgGCGgCGuCCaGUAGa -3' miRNA: 3'- -CAGu--UCCGCGCUUa--CGC-GC-GG-CAUCg -5' |
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12200 | 3' | -55.6 | NC_003309.1 | + | 10885 | 0.67 | 0.608426 |
Target: 5'- gGUCGccGCGCGuuccgcucgcucGCGCGCCugcGUGGCa -3' miRNA: 3'- -CAGUucCGCGCuua---------CGCGCGG---CAUCG- -5' |
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12200 | 3' | -55.6 | NC_003309.1 | + | 31741 | 0.67 | 0.604014 |
Target: 5'- aUCAu-GCGCGAugaGCGUgagugGCCGUGGCc -3' miRNA: 3'- cAGUucCGCGCUua-CGCG-----CGGCAUCG- -5' |
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12200 | 3' | -55.6 | NC_003309.1 | + | 5064 | 0.67 | 0.604014 |
Target: 5'- ---cGGGCGCGGcgGCcgGUGCCGcgacGGCg -3' miRNA: 3'- caguUCCGCGCUuaCG--CGCGGCa---UCG- -5' |
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12200 | 3' | -55.6 | NC_003309.1 | + | 34570 | 0.68 | 0.571085 |
Target: 5'- -cCGAGaGCGCGcAGUGCGCcugguacgcgaGCagCGUAGCg -3' miRNA: 3'- caGUUC-CGCGC-UUACGCG-----------CG--GCAUCG- -5' |
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12200 | 3' | -55.6 | NC_003309.1 | + | 49883 | 0.68 | 0.569994 |
Target: 5'- cUCAAGuuccaucGCGCGAAUGaGCGCgGUucggAGCa -3' miRNA: 3'- cAGUUC-------CGCGCUUACgCGCGgCA----UCG- -5' |
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12200 | 3' | -55.6 | NC_003309.1 | + | 5335 | 0.68 | 0.560198 |
Target: 5'- uUCGAgagcGGCaGCGugcGCGCGCCG-AGCu -3' miRNA: 3'- cAGUU----CCG-CGCuuaCGCGCGGCaUCG- -5' |
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12200 | 3' | -55.6 | NC_003309.1 | + | 4631 | 0.68 | 0.560198 |
Target: 5'- --gGAGGCGCGAacuucggcagcgAUGCGauugauugcUGCCuGUGGCg -3' miRNA: 3'- cagUUCCGCGCU------------UACGC---------GCGG-CAUCG- -5' |
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12200 | 3' | -55.6 | NC_003309.1 | + | 32961 | 0.69 | 0.496351 |
Target: 5'- --uGAGGCGCGAGaGCGCGaCGacccugAGCu -3' miRNA: 3'- cagUUCCGCGCUUaCGCGCgGCa-----UCG- -5' |
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12200 | 3' | -55.6 | NC_003309.1 | + | 32058 | 0.69 | 0.475788 |
Target: 5'- -cCGAGGCGCGcAAUGCaCGCUucgcUGGCg -3' miRNA: 3'- caGUUCCGCGC-UUACGcGCGGc---AUCG- -5' |
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12200 | 3' | -55.6 | NC_003309.1 | + | 5164 | 0.7 | 0.445765 |
Target: 5'- uUCGAGGCGagc-UGCGCGUCGccGCg -3' miRNA: 3'- cAGUUCCGCgcuuACGCGCGGCauCG- -5' |
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12200 | 3' | -55.6 | NC_003309.1 | + | 7232 | 0.71 | 0.380092 |
Target: 5'- gGUCGAGauaccCGCGuuUGCGCGCCGgcAGUa -3' miRNA: 3'- -CAGUUCc----GCGCuuACGCGCGGCa-UCG- -5' |
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12200 | 3' | -55.6 | NC_003309.1 | + | 15439 | 0.71 | 0.380092 |
Target: 5'- cGUCGAGGUagcgcGCGAGUGUccgGCGCCGg--- -3' miRNA: 3'- -CAGUUCCG-----CGCUUACG---CGCGGCaucg -5' |
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12200 | 3' | -55.6 | NC_003309.1 | + | 30804 | 0.73 | 0.290758 |
Target: 5'- cGUCu-GGCGCGcAAUGuCGCGCCGcgucuGCa -3' miRNA: 3'- -CAGuuCCGCGC-UUAC-GCGCGGCau---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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