miRNA: 3'- -CCCaCCGCGCUaGcAGCCGaUGUa--GC- -5'
miRNA: 3'- cCCAC-C-GCGCUAGCa---GCCG-AUGUaGC- -5'
miRNA: 3'- cCCa--CCGCG-CuaGCAGC------CGAUGUAGC- -5'
miRNA: 3'- cCCa-CCG-CGCUA--GCA------GCCGAUGUAGC- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 12203 | 3' | -56 | NC_003309.1 | + | 4633 | 0.66 | 0.711193 |
|
Target: 5'- cGGGaGGCGCGAaCuUCGGCaGCGaugCGa -3' miRNA: 3'- -CCCaCCGCGCUaGcAGCCGaUGUa--GC- -5' |
|||||||
| 12203 | 3' | -56 | NC_003309.1 | + | 35370 | 0.66 | 0.711193 |
|
Target: 5'- aGGUGcGcCGCGAUCGcacaCGGCaUACAaCGg -3' miRNA: 3'- cCCAC-C-GCGCUAGCa---GCCG-AUGUaGC- -5' |
|||||||
| 12203 | 3' | -56 | NC_003309.1 | + | 3306 | 0.67 | 0.625118 |
|
Target: 5'- cGGaaaGGCGCaGcgCGUCGaucagcGCUGCAUCGa -3' miRNA: 3'- cCCa--CCGCG-CuaGCAGC------CGAUGUAGC- -5' |
|||||||
| 12203 | 3' | -56 | NC_003309.1 | + | 37636 | 0.68 | 0.581904 |
|
Target: 5'- cGGccGGCuGCGAUaaCGUcccggcCGGCUACGUCGg -3' miRNA: 3'- cCCa-CCG-CGCUA--GCA------GCCGAUGUAGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home