miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12203 5' -51.3 NC_003309.1 + 983 0.66 0.90834
Target:  5'- uGCCGAUG--CCGACGccCGCGGCGGuCAc -3'
miRNA:   3'- -UGGCUAUagGGCUGCu-GCGUUGUU-GU- -5'
12203 5' -51.3 NC_003309.1 + 19199 0.66 0.886896
Target:  5'- cGCCGuUGUCCuugcgccauuCGGCGACGUAGCucgucGCGu -3'
miRNA:   3'- -UGGCuAUAGG----------GCUGCUGCGUUGu----UGU- -5'
12203 5' -51.3 NC_003309.1 + 47501 0.66 0.886896
Target:  5'- aGCU----UCUCGagGCGGCGCAGCGACAc -3'
miRNA:   3'- -UGGcuauAGGGC--UGCUGCGUUGUUGU- -5'
12203 5' -51.3 NC_003309.1 + 33177 0.67 0.871225
Target:  5'- cACUGAUGcgcugaCUGACGAC-CAACGGCAa -3'
miRNA:   3'- -UGGCUAUag----GGCUGCUGcGUUGUUGU- -5'
12203 5' -51.3 NC_003309.1 + 8741 0.67 0.862994
Target:  5'- -gCGAUGUCCCGAa-GCGCuuCGAUc -3'
miRNA:   3'- ugGCUAUAGGGCUgcUGCGuuGUUGu -5'
12203 5' -51.3 NC_003309.1 + 24018 0.67 0.862994
Target:  5'- cACCG----CCCGucguCGACGCAGCuGCAg -3'
miRNA:   3'- -UGGCuauaGGGCu---GCUGCGUUGuUGU- -5'
12203 5' -51.3 NC_003309.1 + 18329 0.67 0.845781
Target:  5'- gACCGG-AUCggacggcauaUCGGcCGACGCGACGACGg -3'
miRNA:   3'- -UGGCUaUAG----------GGCU-GCUGCGUUGUUGU- -5'
12203 5' -51.3 NC_003309.1 + 5391 0.68 0.836816
Target:  5'- cACCGAUGUagCCGACGAuCGCGcCAc-- -3'
miRNA:   3'- -UGGCUAUAg-GGCUGCU-GCGUuGUugu -5'
12203 5' -51.3 NC_003309.1 + 3559 0.68 0.827624
Target:  5'- gACCGcguaggcggcGUAUCgCGACGacugaucgccGCGCAGCAGCc -3'
miRNA:   3'- -UGGC----------UAUAGgGCUGC----------UGCGUUGUUGu -5'
12203 5' -51.3 NC_003309.1 + 44089 0.68 0.818216
Target:  5'- gACCGAUugCCgGGCGAacgUGCAugAGCAc -3'
miRNA:   3'- -UGGCUAuaGGgCUGCU---GCGUugUUGU- -5'
12203 5' -51.3 NC_003309.1 + 9703 0.68 0.808602
Target:  5'- uGCCGuGUGUCgCGcGCGAUGC-GCAGCAc -3'
miRNA:   3'- -UGGC-UAUAGgGC-UGCUGCGuUGUUGU- -5'
12203 5' -51.3 NC_003309.1 + 12807 0.68 0.798793
Target:  5'- aAUUGAgcuugCCCGACGcCGCgAACGACAc -3'
miRNA:   3'- -UGGCUaua--GGGCUGCuGCG-UUGUUGU- -5'
12203 5' -51.3 NC_003309.1 + 32829 0.69 0.788801
Target:  5'- gGCCGAaGUCCUGuGCG--GCAACGACGa -3'
miRNA:   3'- -UGGCUaUAGGGC-UGCugCGUUGUUGU- -5'
12203 5' -51.3 NC_003309.1 + 22726 0.69 0.757843
Target:  5'- cGCUGAUcGUCgCCGGCGACGCcgaaAACGc -3'
miRNA:   3'- -UGGCUA-UAG-GGCUGCUGCGuug-UUGU- -5'
12203 5' -51.3 NC_003309.1 + 31713 0.7 0.725668
Target:  5'- gGCCGcAUGUCUgGcuCGGCGCGACGAUc -3'
miRNA:   3'- -UGGC-UAUAGGgCu-GCUGCGUUGUUGu -5'
12203 5' -51.3 NC_003309.1 + 36083 0.7 0.725668
Target:  5'- gAUCGAcGUCCaCGACGGcCGCGuauACAGCGu -3'
miRNA:   3'- -UGGCUaUAGG-GCUGCU-GCGU---UGUUGU- -5'
12203 5' -51.3 NC_003309.1 + 13229 0.7 0.69261
Target:  5'- gACCGAgAUCCCGcCGuuGCGCGcCGGCGa -3'
miRNA:   3'- -UGGCUaUAGGGCuGC--UGCGUuGUUGU- -5'
12203 5' -51.3 NC_003309.1 + 9836 0.7 0.69261
Target:  5'- uGCCGAgacaCCCGACaACGCGACcGCc -3'
miRNA:   3'- -UGGCUaua-GGGCUGcUGCGUUGuUGu -5'
12203 5' -51.3 NC_003309.1 + 10625 0.71 0.670244
Target:  5'- cGCCGAUuUCCUGACuGC-CGGCAACGu -3'
miRNA:   3'- -UGGCUAuAGGGCUGcUGcGUUGUUGU- -5'
12203 5' -51.3 NC_003309.1 + 30216 0.71 0.647727
Target:  5'- uGCCGAUugaCCGACGACGaAACAAa- -3'
miRNA:   3'- -UGGCUAuagGGCUGCUGCgUUGUUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.