miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12205 3' -59.2 NC_003309.1 + 8532 0.66 0.512869
Target:  5'- cGGCGGCGGCACGaGCuucGGCGCaCCGc- -3'
miRNA:   3'- -CUGCUGCCGUGC-CGc--UUGUGgGGCuu -5'
12205 3' -59.2 NC_003309.1 + 39806 0.66 0.510817
Target:  5'- cGAUGAagcacauCGGcCGCGGCGAGCACCacaugcaCUGAc -3'
miRNA:   3'- -CUGCU-------GCC-GUGCCGCUUGUGG-------GGCUu -5'
12205 3' -59.2 NC_003309.1 + 14743 0.66 0.502644
Target:  5'- cGACGcCuGGUugaaauucgaaGCGGUcAACACCCCGAAc -3'
miRNA:   3'- -CUGCuG-CCG-----------UGCCGcUUGUGGGGCUU- -5'
12205 3' -59.2 NC_003309.1 + 43090 0.66 0.49251
Target:  5'- aGACG-CGGCGCGaGCGAcuCACugccgCCCGGGu -3'
miRNA:   3'- -CUGCuGCCGUGC-CGCUu-GUG-----GGGCUU- -5'
12205 3' -59.2 NC_003309.1 + 37915 0.66 0.462697
Target:  5'- -uCGGCGGgGCGGCccguaugcGCGCCCCGc- -3'
miRNA:   3'- cuGCUGCCgUGCCGcu------UGUGGGGCuu -5'
12205 3' -59.2 NC_003309.1 + 28476 0.67 0.442401
Target:  5'- cACGcCGGCccguauaGCGGCG-AUugCCCGAGg -3'
miRNA:   3'- cUGCuGCCG-------UGCCGCuUGugGGGCUU- -5'
12205 3' -59.2 NC_003309.1 + 26175 0.67 0.433858
Target:  5'- gGGCGGCGGCaACGGCaAAcCACCCa--- -3'
miRNA:   3'- -CUGCUGCCG-UGCCGcUU-GUGGGgcuu -5'
12205 3' -59.2 NC_003309.1 + 39741 0.67 0.424479
Target:  5'- aGACGAUGGCACaGCaccGCACCCacuaugaGAAa -3'
miRNA:   3'- -CUGCUGCCGUGcCGcu-UGUGGGg------CUU- -5'
12205 3' -59.2 NC_003309.1 + 11769 0.67 0.415223
Target:  5'- cGCGuCGGCGCgcccGGCGAucaGCCCCGc- -3'
miRNA:   3'- cUGCuGCCGUG----CCGCUug-UGGGGCuu -5'
12205 3' -59.2 NC_003309.1 + 22469 0.68 0.387331
Target:  5'- cGCGGCGGCaucgugcGCGGCGAucgcACGCUgCCGGc -3'
miRNA:   3'- cUGCUGCCG-------UGCCGCU----UGUGG-GGCUu -5'
12205 3' -59.2 NC_003309.1 + 26954 0.69 0.329838
Target:  5'- cGACGuCaGCGC-GCGAACACCgCCGAc -3'
miRNA:   3'- -CUGCuGcCGUGcCGCUUGUGG-GGCUu -5'
12205 3' -59.2 NC_003309.1 + 31472 0.69 0.306879
Target:  5'- cGGCGaaaGCGGcCACGGCGcccgcccgauGCAUCCCGAc -3'
miRNA:   3'- -CUGC---UGCC-GUGCCGCu---------UGUGGGGCUu -5'
12205 3' -59.2 NC_003309.1 + 37213 0.7 0.285163
Target:  5'- gGACGA-GGUAaaGGCGAACGCCgCGAAg -3'
miRNA:   3'- -CUGCUgCCGUg-CCGCUUGUGGgGCUU- -5'
12205 3' -59.2 NC_003309.1 + 12931 0.7 0.264678
Target:  5'- -cCGACGGCAuCGGa-GACACCgCCGAAu -3'
miRNA:   3'- cuGCUGCCGU-GCCgcUUGUGG-GGCUU- -5'
12205 3' -59.2 NC_003309.1 + 31203 0.71 0.227307
Target:  5'- uGACGGCcgcaGGCACGaCGAAUuCCCCGAGg -3'
miRNA:   3'- -CUGCUG----CCGUGCcGCUUGuGGGGCUU- -5'
12205 3' -59.2 NC_003309.1 + 27342 0.73 0.174997
Target:  5'- aACGggaGCGGCGCGGCGAACugCC-GAu -3'
miRNA:   3'- cUGC---UGCCGUGCCGCUUGugGGgCUu -5'
12205 3' -59.2 NC_003309.1 + 32389 0.74 0.153079
Target:  5'- cGGCGACGGCucgcuGCGGCGGccguguccuguGCAucCCCCGAc -3'
miRNA:   3'- -CUGCUGCCG-----UGCCGCU-----------UGU--GGGGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.