miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12206 3' -57.8 NC_003309.1 + 7148 0.66 0.574635
Target:  5'- cGAUaccGGCCCgauagcggaUGCGCAUG-CUCGCg -3'
miRNA:   3'- cCUAguaCCGGG---------GCGCGUGCaGAGCG- -5'
12206 3' -57.8 NC_003309.1 + 17808 0.66 0.574635
Target:  5'- cGAUCGUcGCCgUGUGCGCGUUcggCGUg -3'
miRNA:   3'- cCUAGUAcCGGgGCGCGUGCAGa--GCG- -5'
12206 3' -57.8 NC_003309.1 + 18431 0.66 0.574635
Target:  5'- cGGAUCGUuguaGCUgacgagcgcgaCCGUguaGCGCGUCUUGCg -3'
miRNA:   3'- -CCUAGUAc---CGG-----------GGCG---CGUGCAGAGCG- -5'
12206 3' -57.8 NC_003309.1 + 39293 0.66 0.573574
Target:  5'- cGGAcgaugCGUGGCaaCUCGCGCaugcguuGCGUCgccagCGCg -3'
miRNA:   3'- -CCUa----GUACCG--GGGCGCG-------UGCAGa----GCG- -5'
12206 3' -57.8 NC_003309.1 + 10059 0.67 0.553498
Target:  5'- ---cCGUGccGCCcgCCGCGCGCGUCagCGCc -3'
miRNA:   3'- ccuaGUAC--CGG--GGCGCGUGCAGa-GCG- -5'
12206 3' -57.8 NC_003309.1 + 43985 0.67 0.553498
Target:  5'- --uUCGUGuGCCUuagugcagcgguCGCGCACGcUCUCGg -3'
miRNA:   3'- ccuAGUAC-CGGG------------GCGCGUGC-AGAGCg -5'
12206 3' -57.8 NC_003309.1 + 17767 0.67 0.511987
Target:  5'- cGGAUCAgccaGCCguuuuUCGCGCGCGgcagCUCGa -3'
miRNA:   3'- -CCUAGUac--CGG-----GGCGCGUGCa---GAGCg -5'
12206 3' -57.8 NC_003309.1 + 19978 0.67 0.510965
Target:  5'- cGGUCGUGaucugcuGCgCCUGCGCGCGaUC-CGCu -3'
miRNA:   3'- cCUAGUAC-------CG-GGGCGCGUGC-AGaGCG- -5'
12206 3' -57.8 NC_003309.1 + 28655 0.67 0.501806
Target:  5'- uGAUCAUcGCCaUCGUGUGCGUCUCu- -3'
miRNA:   3'- cCUAGUAcCGG-GGCGCGUGCAGAGcg -5'
12206 3' -57.8 NC_003309.1 + 45264 0.68 0.452341
Target:  5'- uGGUCGaaugccGGCCgCCGCGUGCGcCUCGa -3'
miRNA:   3'- cCUAGUa-----CCGG-GGCGCGUGCaGAGCg -5'
12206 3' -57.8 NC_003309.1 + 12487 0.69 0.433309
Target:  5'- cGAUUgAUGGCCUgauucagcuCGCGCGCGUUUCa- -3'
miRNA:   3'- cCUAG-UACCGGG---------GCGCGUGCAGAGcg -5'
12206 3' -57.8 NC_003309.1 + 10892 0.69 0.42397
Target:  5'- cGGUCGcGGUCgCCGCGCGuucCG-CUCGCu -3'
miRNA:   3'- cCUAGUaCCGG-GGCGCGU---GCaGAGCG- -5'
12206 3' -57.8 NC_003309.1 + 37331 0.7 0.362124
Target:  5'- aGAUCAcgGGCgucuaCCUGCGCGCGaUCgugCGCg -3'
miRNA:   3'- cCUAGUa-CCG-----GGGCGCGUGC-AGa--GCG- -5'
12206 3' -57.8 NC_003309.1 + 11752 0.72 0.285192
Target:  5'- cGAUCA--GCCCCGCcaugcggaccuGCGCGUCguUCGCg -3'
miRNA:   3'- cCUAGUacCGGGGCG-----------CGUGCAG--AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.