Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12208 | 3' | -55.1 | NC_003309.1 | + | 30993 | 0.66 | 0.724416 |
Target: 5'- aUCGCGAGCGgcuacaacCGCAaCCGCgugCGa -3' miRNA: 3'- cAGCGCUCGUac------GCGUaGGCGauaGC- -5' |
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12208 | 3' | -55.1 | NC_003309.1 | + | 10891 | 0.66 | 0.680904 |
Target: 5'- gGUCGCGGucGCc-GCGCGUuCCGCUcgCu -3' miRNA: 3'- -CAGCGCU--CGuaCGCGUA-GGCGAuaGc -5' |
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12208 | 3' | -55.1 | NC_003309.1 | + | 5159 | 0.66 | 0.680904 |
Target: 5'- --gGCGAGC-UGCGCGUcgCCGCg--CGc -3' miRNA: 3'- cagCGCUCGuACGCGUA--GGCGauaGC- -5' |
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12208 | 3' | -55.1 | NC_003309.1 | + | 37841 | 0.67 | 0.658818 |
Target: 5'- cGUCGCGGcCGUGCuGUuucucgugCUGCUGUCGa -3' miRNA: 3'- -CAGCGCUcGUACG-CGua------GGCGAUAGC- -5' |
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12208 | 3' | -55.1 | NC_003309.1 | + | 11863 | 0.67 | 0.658818 |
Target: 5'- -gCGCGAGCucGCGCGUCagaUUGUCGa -3' miRNA: 3'- caGCGCUCGuaCGCGUAGgc-GAUAGC- -5' |
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12208 | 3' | -55.1 | NC_003309.1 | + | 19977 | 0.67 | 0.658818 |
Target: 5'- gGUCGUGAucugcugcGCcUGCGCGcgaUCCGCU-UCGa -3' miRNA: 3'- -CAGCGCU--------CGuACGCGU---AGGCGAuAGC- -5' |
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12208 | 3' | -55.1 | NC_003309.1 | + | 10491 | 0.67 | 0.647732 |
Target: 5'- aUCGCGAggcuuucgcGCAUcgcGCGCAUgCCGCgaguUCGg -3' miRNA: 3'- cAGCGCU---------CGUA---CGCGUA-GGCGau--AGC- -5' |
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12208 | 3' | -55.1 | NC_003309.1 | + | 27936 | 0.67 | 0.647732 |
Target: 5'- cGUCGCGgcgGGCAcGCGCAauugaUCCGUcGUUGc -3' miRNA: 3'- -CAGCGC---UCGUaCGCGU-----AGGCGaUAGC- -5' |
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12208 | 3' | -55.1 | NC_003309.1 | + | 19492 | 0.67 | 0.641072 |
Target: 5'- cGUCGCGAuucgGCGUGCGgcuguaccagaucucCGUUCGCUgcguGUCGc -3' miRNA: 3'- -CAGCGCU----CGUACGC---------------GUAGGCGA----UAGC- -5' |
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12208 | 3' | -55.1 | NC_003309.1 | + | 45569 | 0.67 | 0.613318 |
Target: 5'- --gGaCGAGCAUGCcgucgcagguucuGCGUCCGCgagaagGUCGu -3' miRNA: 3'- cagC-GCUCGUACG-------------CGUAGGCGa-----UAGC- -5' |
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12208 | 3' | -55.1 | NC_003309.1 | + | 9696 | 0.68 | 0.603344 |
Target: 5'- uGUCGCGcGCgAUGCGCAgcacgucguUCUGCgcaAUCGc -3' miRNA: 3'- -CAGCGCuCG-UACGCGU---------AGGCGa--UAGC- -5' |
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12208 | 3' | -55.1 | NC_003309.1 | + | 12121 | 0.68 | 0.592286 |
Target: 5'- uGUUGuCGAGCAUGCGC--UCGCUuUCc -3' miRNA: 3'- -CAGC-GCUCGUACGCGuaGGCGAuAGc -5' |
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12208 | 3' | -55.1 | NC_003309.1 | + | 12165 | 0.7 | 0.484907 |
Target: 5'- gGUUGCGAccgccucgacgcGCAguUGCGCgAUCCGCUGcCGg -3' miRNA: 3'- -CAGCGCU------------CGU--ACGCG-UAGGCGAUaGC- -5' |
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12208 | 3' | -55.1 | NC_003309.1 | + | 41414 | 0.7 | 0.444535 |
Target: 5'- -gCGCG-GCAUGCGCAaggcaCCGCccGUCGa -3' miRNA: 3'- caGCGCuCGUACGCGUa----GGCGa-UAGC- -5' |
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12208 | 3' | -55.1 | NC_003309.1 | + | 10588 | 0.7 | 0.434738 |
Target: 5'- cGUCGCGAcauGCGcuUGCGCcgCCGCc-UCGa -3' miRNA: 3'- -CAGCGCU---CGU--ACGCGuaGGCGauAGC- -5' |
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12208 | 3' | -55.1 | NC_003309.1 | + | 51919 | 0.71 | 0.396844 |
Target: 5'- --aGCGAcagccGCA-GUGCGUCCGCUAUCc -3' miRNA: 3'- cagCGCU-----CGUaCGCGUAGGCGAUAGc -5' |
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12208 | 3' | -55.1 | NC_003309.1 | + | 3940 | 0.72 | 0.369854 |
Target: 5'- -aUGCG-GCAgccaucUGCGCG-CCGCUGUCGa -3' miRNA: 3'- caGCGCuCGU------ACGCGUaGGCGAUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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