miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12208 5' -48.7 NC_003309.1 + 22485 0.67 0.963085
Target:  5'- cGGCGGCCAccgccgacGcgGCGgcaUCGUgcgcgGCGAu -3'
miRNA:   3'- -CCGCUGGU--------CuaCGCauaAGCAa----UGCU- -5'
12208 5' -48.7 NC_003309.1 + 48014 0.69 0.910888
Target:  5'- aGGUcGCCGGAUGCGauUUCGU--CGAa -3'
miRNA:   3'- -CCGcUGGUCUACGCauAAGCAauGCU- -5'
12208 5' -48.7 NC_003309.1 + 32862 0.71 0.839253
Target:  5'- gGGCGAuCCAGAagGCGUGcUUCGcgagcUGCGGg -3'
miRNA:   3'- -CCGCU-GGUCUa-CGCAU-AAGCa----AUGCU- -5'
12208 5' -48.7 NC_003309.1 + 9558 0.72 0.7702
Target:  5'- cGGCGGCUu-GUGCGUAUUCGcggauCGAa -3'
miRNA:   3'- -CCGCUGGucUACGCAUAAGCaau--GCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.