Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
12210 | 5' | -49.8 | NC_003309.1 | + | 26851 | 0.69 | 0.849684 |
Target: 5'- -gUCGAUCCGgGGu--CGCcgacauCGAGCCc -3' miRNA: 3'- caAGCUAGGCgCUuauGCGu-----GUUCGG- -5' |
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12210 | 5' | -49.8 | NC_003309.1 | + | 4106 | 0.69 | 0.835222 |
Target: 5'- uGUUCGAccgccggaUCUGCGAccGCcugauucacggcagaGCGCAGGCCu -3' miRNA: 3'- -CAAGCU--------AGGCGCUuaUG---------------CGUGUUCGG- -5' |
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12210 | 5' | -49.8 | NC_003309.1 | + | 19736 | 0.7 | 0.792549 |
Target: 5'- -aUCGGUUCGCGAAggucCGUAcCGAGCg -3' miRNA: 3'- caAGCUAGGCGCUUau--GCGU-GUUCGg -5' |
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12210 | 5' | -49.8 | NC_003309.1 | + | 52516 | 0.71 | 0.750707 |
Target: 5'- -aUCGAagaCCuCGAAgaugaagcgcucUACGCGCAAGCCa -3' miRNA: 3'- caAGCUa--GGcGCUU------------AUGCGUGUUCGG- -5' |
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12210 | 5' | -49.8 | NC_003309.1 | + | 10211 | 0.71 | 0.750707 |
Target: 5'- -gUCGAggugcUCUGCGAcGUACGUgauucccugcGCAAGCCu -3' miRNA: 3'- caAGCU-----AGGCGCU-UAUGCG----------UGUUCGG- -5' |
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12210 | 5' | -49.8 | NC_003309.1 | + | 12584 | 0.71 | 0.73989 |
Target: 5'- -cUCGAUCUcgGCGAuguacuCGgGCGAGCCa -3' miRNA: 3'- caAGCUAGG--CGCUuau---GCgUGUUCGG- -5' |
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12210 | 5' | -49.8 | NC_003309.1 | + | 7231 | 0.72 | 0.706786 |
Target: 5'- -gUCGAgauacCCGCGuuUGCGCGCcGGCa -3' miRNA: 3'- caAGCUa----GGCGCuuAUGCGUGuUCGg -5' |
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12210 | 5' | -49.8 | NC_003309.1 | + | 13520 | 0.73 | 0.650204 |
Target: 5'- -gUCGAUUCGCGAu--UGUuCAGGCCg -3' miRNA: 3'- caAGCUAGGCGCUuauGCGuGUUCGG- -5' |
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12210 | 5' | -49.8 | NC_003309.1 | + | 11967 | 0.74 | 0.559275 |
Target: 5'- --gCGcgCCGCGucgGCGUugAAGCCg -3' miRNA: 3'- caaGCuaGGCGCuuaUGCGugUUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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