miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12214 3' -54.6 NC_003309.1 + 12072 0.66 0.77472
Target:  5'- -cGCuACGCGGGCcGccGCGGCGUUGGu -3'
miRNA:   3'- gcUGuUGCGCUCGuCa-CGCUGCAGCU- -5'
12214 3' -54.6 NC_003309.1 + 22465 0.66 0.77472
Target:  5'- gCGGCAucguGCGCGGcgaucGCAcGcUGcCGGCGUCGAg -3'
miRNA:   3'- -GCUGU----UGCGCU-----CGU-C-AC-GCUGCAGCU- -5'
12214 3' -54.6 NC_003309.1 + 36365 0.66 0.754415
Target:  5'- cCGACAGCagguCGAcgcGCAGUugaacGCGACGaUCGAa -3'
miRNA:   3'- -GCUGUUGc---GCU---CGUCA-----CGCUGC-AGCU- -5'
12214 3' -54.6 NC_003309.1 + 30620 0.66 0.74407
Target:  5'- aCGACAaACGCGAGCA---CGACGagCGGc -3'
miRNA:   3'- -GCUGU-UGCGCUCGUcacGCUGCa-GCU- -5'
12214 3' -54.6 NC_003309.1 + 34555 0.67 0.690887
Target:  5'- gCGcCugguACGCGAGCAGcguaGCGAgcaccCGUCGAu -3'
miRNA:   3'- -GCuGu---UGCGCUCGUCa---CGCU-----GCAGCU- -5'
12214 3' -54.6 NC_003309.1 + 8848 0.68 0.669142
Target:  5'- aGACGACGCGAacgaacagccgcGCAuucgcuugcguGUGCG-CGUCGu -3'
miRNA:   3'- gCUGUUGCGCU------------CGU-----------CACGCuGCAGCu -5'
12214 3' -54.6 NC_003309.1 + 7766 0.68 0.636291
Target:  5'- -uACGGCGCcGGCgccuucgccGGUGCGACGcCGAg -3'
miRNA:   3'- gcUGUUGCGcUCG---------UCACGCUGCaGCU- -5'
12214 3' -54.6 NC_003309.1 + 35051 0.68 0.62532
Target:  5'- cCGAUcccGAC-CGAGCGccuGUGCGACGcCGAc -3'
miRNA:   3'- -GCUG---UUGcGCUCGU---CACGCUGCaGCU- -5'
12214 3' -54.6 NC_003309.1 + 46088 0.68 0.62532
Target:  5'- gCGACGGCGauAGCAuccucgguGUGgcCGACGUCGAg -3'
miRNA:   3'- -GCUGUUGCgcUCGU--------CAC--GCUGCAGCU- -5'
12214 3' -54.6 NC_003309.1 + 16917 0.71 0.48633
Target:  5'- cCGACAGCGaCGAGU---GCGGCGcCGAg -3'
miRNA:   3'- -GCUGUUGC-GCUCGucaCGCUGCaGCU- -5'
12214 3' -54.6 NC_003309.1 + 17734 0.71 0.476176
Target:  5'- uCGAucCGAUGCGAGCGcucGUagaGCGACGUCGu -3'
miRNA:   3'- -GCU--GUUGCGCUCGU---CA---CGCUGCAGCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.