miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12218 3' -57.1 NC_003309.1 + 43970 0.66 0.633531
Target:  5'- gCAGCGG-UCGCGCAcGCUcucGgGCaUCGGg -3'
miRNA:   3'- -GUCGCCuAGCGCGU-UGA---CgCGcAGCU- -5'
12218 3' -57.1 NC_003309.1 + 11973 0.66 0.633531
Target:  5'- -cGCGGcgCGCGCcGCgucgGCGUUGAa -3'
miRNA:   3'- guCGCCuaGCGCGuUGacg-CGCAGCU- -5'
12218 3' -57.1 NC_003309.1 + 18149 0.66 0.632442
Target:  5'- aCAGUGa--CGCGCGAUUGCGUacagcgcccacuuGUCGAc -3'
miRNA:   3'- -GUCGCcuaGCGCGUUGACGCG-------------CAGCU- -5'
12218 3' -57.1 NC_003309.1 + 50282 0.66 0.600884
Target:  5'- --aUGGcUCGCGCcgaAACUGCGC-UCGAg -3'
miRNA:   3'- gucGCCuAGCGCG---UUGACGCGcAGCU- -5'
12218 3' -57.1 NC_003309.1 + 11233 0.66 0.600884
Target:  5'- -cGCGGAcUGCGCGucguCUGCcGCGcgCGAc -3'
miRNA:   3'- guCGCCUaGCGCGUu---GACG-CGCa-GCU- -5'
12218 3' -57.1 NC_003309.1 + 9097 0.67 0.568471
Target:  5'- uCGGCGGAcgacaucugcUCGCGCAGCUcgGCuaaCGUCu- -3'
miRNA:   3'- -GUCGCCU----------AGCGCGUUGA--CGc--GCAGcu -5'
12218 3' -57.1 NC_003309.1 + 17812 0.67 0.568471
Target:  5'- uCGGC-GAUCGuCGcCGugUGCGCGUuCGGc -3'
miRNA:   3'- -GUCGcCUAGC-GC-GUugACGCGCA-GCU- -5'
12218 3' -57.1 NC_003309.1 + 27701 0.67 0.536512
Target:  5'- uCAGCGGGUaacgUGgGCugAACUGCGCGaaaaauggcgucUCGAg -3'
miRNA:   3'- -GUCGCCUA----GCgCG--UUGACGCGC------------AGCU- -5'
12218 3' -57.1 NC_003309.1 + 5181 0.68 0.494937
Target:  5'- -cGCGcucGAUCGCcaguuucgagGCgAGCUGCGCGUCGc -3'
miRNA:   3'- guCGC---CUAGCG----------CG-UUGACGCGCAGCu -5'
12218 3' -57.1 NC_003309.1 + 27932 0.68 0.484768
Target:  5'- gCGGCGGGcaCGCGCAAUUGaucCGUCGu -3'
miRNA:   3'- -GUCGCCUa-GCGCGUUGACgc-GCAGCu -5'
12218 3' -57.1 NC_003309.1 + 8828 0.68 0.46474
Target:  5'- -cGCGcauUCGCuuGCGugUGCGCGUCGu -3'
miRNA:   3'- guCGCcu-AGCG--CGUugACGCGCAGCu -5'
12218 3' -57.1 NC_003309.1 + 4990 0.69 0.454888
Target:  5'- uCAGCGGcuucCGCGCGuucgauCUGCGCGgUCa- -3'
miRNA:   3'- -GUCGCCua--GCGCGUu-----GACGCGC-AGcu -5'
12218 3' -57.1 NC_003309.1 + 37311 0.69 0.449032
Target:  5'- -cGCGcGAUCGUGCGcgacGCccugaaucucgccgGCGCGUCGAu -3'
miRNA:   3'- guCGC-CUAGCGCGU----UGa-------------CGCGCAGCU- -5'
12218 3' -57.1 NC_003309.1 + 37101 0.69 0.449032
Target:  5'- gCAGCGacgcaGAUCGCGCAgcagaaggagaacgaACUGCGUGcagcCGAg -3'
miRNA:   3'- -GUCGC-----CUAGCGCGU---------------UGACGCGCa---GCU- -5'
12218 3' -57.1 NC_003309.1 + 37238 0.69 0.435531
Target:  5'- aGGCGG--CGCuaCAGCaGCGCGUCGAg -3'
miRNA:   3'- gUCGCCuaGCGc-GUUGaCGCGCAGCU- -5'
12218 3' -57.1 NC_003309.1 + 17534 0.69 0.426032
Target:  5'- --cUGGAUCugGCGCAcccACgGCGCGUCGGa -3'
miRNA:   3'- gucGCCUAG--CGCGU---UGaCGCGCAGCU- -5'
12218 3' -57.1 NC_003309.1 + 46490 0.69 0.426032
Target:  5'- uCGGCGGGaacugcUCGCGCAua-GCGCgGUUGAg -3'
miRNA:   3'- -GUCGCCU------AGCGCGUugaCGCG-CAGCU- -5'
12218 3' -57.1 NC_003309.1 + 9559 0.69 0.41387
Target:  5'- gCGGCGGcUUGUGCGuauucgcggaucgaACUGCGCGccgcgUCGAg -3'
miRNA:   3'- -GUCGCCuAGCGCGU--------------UGACGCGC-----AGCU- -5'
12218 3' -57.1 NC_003309.1 + 3308 0.69 0.407411
Target:  5'- -cGCGGAaagGCGCA---GCGCGUCGAu -3'
miRNA:   3'- guCGCCUag-CGCGUugaCGCGCAGCU- -5'
12218 3' -57.1 NC_003309.1 + 15334 0.69 0.407411
Target:  5'- gCAGCGucggCGaugGCuGCUGCGCGUCGGa -3'
miRNA:   3'- -GUCGCcua-GCg--CGuUGACGCGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.