Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12218 | 5' | -53.7 | NC_003309.1 | + | 29971 | 0.66 | 0.745286 |
Target: 5'- cGCCGGCAAGCUGcauAUGCAa-CGCGu- -3' miRNA: 3'- uUGGCUGUUCGAC---UGCGUcaGCGUuu -5' |
|||||||
12218 | 5' | -53.7 | NC_003309.1 | + | 25994 | 0.67 | 0.667089 |
Target: 5'- gAACCGGCAAuGCguGCGUAGUCGUc-- -3' miRNA: 3'- -UUGGCUGUU-CGacUGCGUCAGCGuuu -5' |
|||||||
12218 | 5' | -53.7 | NC_003309.1 | + | 53125 | 0.69 | 0.553226 |
Target: 5'- gGGCUGACAGaggccGCUGuCGCGG-CGCAAGa -3' miRNA: 3'- -UUGGCUGUU-----CGACuGCGUCaGCGUUU- -5' |
|||||||
12218 | 5' | -53.7 | NC_003309.1 | + | 35848 | 0.69 | 0.542058 |
Target: 5'- cAUCGugAAcCUGACGCAGUaCGCAu- -3' miRNA: 3'- uUGGCugUUcGACUGCGUCA-GCGUuu -5' |
|||||||
12218 | 5' | -53.7 | NC_003309.1 | + | 41427 | 0.69 | 0.542058 |
Target: 5'- aGACCGGCAAGaa-GCGCGGcaugCGCAAGg -3' miRNA: 3'- -UUGGCUGUUCgacUGCGUCa---GCGUUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home