miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12219 3' -53.8 NC_003309.1 + 22474 0.71 0.501026
Target:  5'- gCCGAc--GCGGCgGCAUCGuGCGCGGCg -3'
miRNA:   3'- -GGCUcuaCGUCG-CGUAGU-UGUGCCGg -5'
12219 3' -53.8 NC_003309.1 + 23011 0.67 0.74987
Target:  5'- gCGGGAUGaugugguCAGCGaGUCGACGCuuGCCg -3'
miRNA:   3'- gGCUCUAC-------GUCGCgUAGUUGUGc-CGG- -5'
12219 3' -53.8 NC_003309.1 + 24050 0.67 0.76128
Target:  5'- aUCGAuaguUGCuuGCGUGcUCGACACGGCUc -3'
miRNA:   3'- -GGCUcu--ACGu-CGCGU-AGUUGUGCCGG- -5'
12219 3' -53.8 NC_003309.1 + 27341 0.66 0.810867
Target:  5'- aCGGGA-GCGGCGCggCGA-ACuGCCg -3'
miRNA:   3'- gGCUCUaCGUCGCGuaGUUgUGcCGG- -5'
12219 3' -53.8 NC_003309.1 + 28364 0.67 0.750914
Target:  5'- -----cUGCAGCGC----ACGCGGCCa -3'
miRNA:   3'- ggcucuACGUCGCGuaguUGUGCCGG- -5'
12219 3' -53.8 NC_003309.1 + 29731 0.69 0.624707
Target:  5'- uCCGAcugggccaauGAUGCAGUGCAUCGuCgaucuaugcuaucugACGGCa -3'
miRNA:   3'- -GGCU----------CUACGUCGCGUAGUuG---------------UGCCGg -5'
12219 3' -53.8 NC_003309.1 + 34571 0.68 0.697481
Target:  5'- uCCGAGAgcgcGCAGUGCGcCugguACGCGaGCa -3'
miRNA:   3'- -GGCUCUa---CGUCGCGUaGu---UGUGC-CGg -5'
12219 3' -53.8 NC_003309.1 + 35374 0.68 0.653506
Target:  5'- cCCaAGGUGCGcCGCgAUCGcACACGGCa -3'
miRNA:   3'- -GGcUCUACGUcGCG-UAGU-UGUGCCGg -5'
12219 3' -53.8 NC_003309.1 + 35484 0.77 0.245431
Target:  5'- gCCGAu-UGCAGCGCAUgGACACcgacGCCg -3'
miRNA:   3'- -GGCUcuACGUCGCGUAgUUGUGc---CGG- -5'
12219 3' -53.8 NC_003309.1 + 35600 0.68 0.653506
Target:  5'- aCGAgGAUGU-GCGCAUCGACA-GGUUc -3'
miRNA:   3'- gGCU-CUACGuCGCGUAGUUGUgCCGG- -5'
12219 3' -53.8 NC_003309.1 + 35657 0.7 0.565223
Target:  5'- gCGAGAUcCAGCGCGaCGACcaaGGCUg -3'
miRNA:   3'- gGCUCUAcGUCGCGUaGUUGug-CCGG- -5'
12219 3' -53.8 NC_003309.1 + 39001 0.71 0.522109
Target:  5'- uCCGGcgccAUGCAGCGCAUUgAGC-CGGCa -3'
miRNA:   3'- -GGCUc---UACGUCGCGUAG-UUGuGCCGg -5'
12219 3' -53.8 NC_003309.1 + 39605 0.67 0.719128
Target:  5'- gCGAGcGUGCuGCGCuUCGugACGGa- -3'
miRNA:   3'- gGCUC-UACGuCGCGuAGUugUGCCgg -5'
12219 3' -53.8 NC_003309.1 + 41543 0.67 0.755075
Target:  5'- gCGAGAcaaucUGCGGCuccucgagacggaauGCggCAGCccuACGGCCg -3'
miRNA:   3'- gGCUCU-----ACGUCG---------------CGuaGUUG---UGCCGG- -5'
12219 3' -53.8 NC_003309.1 + 43094 0.75 0.324457
Target:  5'- aCCGAGAcGCGGCGCGagCGACucACuGCCg -3'
miRNA:   3'- -GGCUCUaCGUCGCGUa-GUUG--UGcCGG- -5'
12219 3' -53.8 NC_003309.1 + 43529 0.67 0.750914
Target:  5'- gCCGucGGcgGCcaucgcGCGCAUCAGguCGCGGCa -3'
miRNA:   3'- -GGC--UCuaCGu-----CGCGUAGUU--GUGCCGg -5'
12219 3' -53.8 NC_003309.1 + 46056 0.66 0.781597
Target:  5'- gUCGAGcAUGCgAGC-CAUCuuCuCGGCCc -3'
miRNA:   3'- -GGCUC-UACG-UCGcGUAGuuGuGCCGG- -5'
12219 3' -53.8 NC_003309.1 + 46487 0.69 0.620276
Target:  5'- gCGGGAacUGCucGCGCAU-AGCGCGGUUg -3'
miRNA:   3'- gGCUCU--ACGu-CGCGUAgUUGUGCCGG- -5'
12219 3' -53.8 NC_003309.1 + 46660 0.66 0.801286
Target:  5'- aCCGGGc--CGGCGCGUaaugcgCAGCGCaccGGCCu -3'
miRNA:   3'- -GGCUCuacGUCGCGUA------GUUGUG---CCGG- -5'
12219 3' -53.8 NC_003309.1 + 47496 0.7 0.587139
Target:  5'- cUCGAG--GCGGCGCAgCGACACcuucGCCg -3'
miRNA:   3'- -GGCUCuaCGUCGCGUaGUUGUGc---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.