Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12219 | 3' | -53.8 | NC_003309.1 | + | 22474 | 0.71 | 0.501026 |
Target: 5'- gCCGAc--GCGGCgGCAUCGuGCGCGGCg -3' miRNA: 3'- -GGCUcuaCGUCG-CGUAGU-UGUGCCGg -5' |
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12219 | 3' | -53.8 | NC_003309.1 | + | 23011 | 0.67 | 0.74987 |
Target: 5'- gCGGGAUGaugugguCAGCGaGUCGACGCuuGCCg -3' miRNA: 3'- gGCUCUAC-------GUCGCgUAGUUGUGc-CGG- -5' |
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12219 | 3' | -53.8 | NC_003309.1 | + | 24050 | 0.67 | 0.76128 |
Target: 5'- aUCGAuaguUGCuuGCGUGcUCGACACGGCUc -3' miRNA: 3'- -GGCUcu--ACGu-CGCGU-AGUUGUGCCGG- -5' |
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12219 | 3' | -53.8 | NC_003309.1 | + | 27341 | 0.66 | 0.810867 |
Target: 5'- aCGGGA-GCGGCGCggCGA-ACuGCCg -3' miRNA: 3'- gGCUCUaCGUCGCGuaGUUgUGcCGG- -5' |
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12219 | 3' | -53.8 | NC_003309.1 | + | 28364 | 0.67 | 0.750914 |
Target: 5'- -----cUGCAGCGC----ACGCGGCCa -3' miRNA: 3'- ggcucuACGUCGCGuaguUGUGCCGG- -5' |
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12219 | 3' | -53.8 | NC_003309.1 | + | 29731 | 0.69 | 0.624707 |
Target: 5'- uCCGAcugggccaauGAUGCAGUGCAUCGuCgaucuaugcuaucugACGGCa -3' miRNA: 3'- -GGCU----------CUACGUCGCGUAGUuG---------------UGCCGg -5' |
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12219 | 3' | -53.8 | NC_003309.1 | + | 34571 | 0.68 | 0.697481 |
Target: 5'- uCCGAGAgcgcGCAGUGCGcCugguACGCGaGCa -3' miRNA: 3'- -GGCUCUa---CGUCGCGUaGu---UGUGC-CGg -5' |
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12219 | 3' | -53.8 | NC_003309.1 | + | 35374 | 0.68 | 0.653506 |
Target: 5'- cCCaAGGUGCGcCGCgAUCGcACACGGCa -3' miRNA: 3'- -GGcUCUACGUcGCG-UAGU-UGUGCCGg -5' |
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12219 | 3' | -53.8 | NC_003309.1 | + | 35484 | 0.77 | 0.245431 |
Target: 5'- gCCGAu-UGCAGCGCAUgGACACcgacGCCg -3' miRNA: 3'- -GGCUcuACGUCGCGUAgUUGUGc---CGG- -5' |
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12219 | 3' | -53.8 | NC_003309.1 | + | 35600 | 0.68 | 0.653506 |
Target: 5'- aCGAgGAUGU-GCGCAUCGACA-GGUUc -3' miRNA: 3'- gGCU-CUACGuCGCGUAGUUGUgCCGG- -5' |
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12219 | 3' | -53.8 | NC_003309.1 | + | 35657 | 0.7 | 0.565223 |
Target: 5'- gCGAGAUcCAGCGCGaCGACcaaGGCUg -3' miRNA: 3'- gGCUCUAcGUCGCGUaGUUGug-CCGG- -5' |
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12219 | 3' | -53.8 | NC_003309.1 | + | 39001 | 0.71 | 0.522109 |
Target: 5'- uCCGGcgccAUGCAGCGCAUUgAGC-CGGCa -3' miRNA: 3'- -GGCUc---UACGUCGCGUAG-UUGuGCCGg -5' |
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12219 | 3' | -53.8 | NC_003309.1 | + | 39605 | 0.67 | 0.719128 |
Target: 5'- gCGAGcGUGCuGCGCuUCGugACGGa- -3' miRNA: 3'- gGCUC-UACGuCGCGuAGUugUGCCgg -5' |
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12219 | 3' | -53.8 | NC_003309.1 | + | 41543 | 0.67 | 0.755075 |
Target: 5'- gCGAGAcaaucUGCGGCuccucgagacggaauGCggCAGCccuACGGCCg -3' miRNA: 3'- gGCUCU-----ACGUCG---------------CGuaGUUG---UGCCGG- -5' |
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12219 | 3' | -53.8 | NC_003309.1 | + | 43094 | 0.75 | 0.324457 |
Target: 5'- aCCGAGAcGCGGCGCGagCGACucACuGCCg -3' miRNA: 3'- -GGCUCUaCGUCGCGUa-GUUG--UGcCGG- -5' |
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12219 | 3' | -53.8 | NC_003309.1 | + | 43529 | 0.67 | 0.750914 |
Target: 5'- gCCGucGGcgGCcaucgcGCGCAUCAGguCGCGGCa -3' miRNA: 3'- -GGC--UCuaCGu-----CGCGUAGUU--GUGCCGg -5' |
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12219 | 3' | -53.8 | NC_003309.1 | + | 46056 | 0.66 | 0.781597 |
Target: 5'- gUCGAGcAUGCgAGC-CAUCuuCuCGGCCc -3' miRNA: 3'- -GGCUC-UACG-UCGcGUAGuuGuGCCGG- -5' |
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12219 | 3' | -53.8 | NC_003309.1 | + | 46487 | 0.69 | 0.620276 |
Target: 5'- gCGGGAacUGCucGCGCAU-AGCGCGGUUg -3' miRNA: 3'- gGCUCU--ACGu-CGCGUAgUUGUGCCGG- -5' |
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12219 | 3' | -53.8 | NC_003309.1 | + | 46660 | 0.66 | 0.801286 |
Target: 5'- aCCGGGc--CGGCGCGUaaugcgCAGCGCaccGGCCu -3' miRNA: 3'- -GGCUCuacGUCGCGUA------GUUGUG---CCGG- -5' |
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12219 | 3' | -53.8 | NC_003309.1 | + | 47496 | 0.7 | 0.587139 |
Target: 5'- cUCGAG--GCGGCGCAgCGACACcuucGCCg -3' miRNA: 3'- -GGCUCuaCGUCGCGUaGUUGUGc---CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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