miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12220 3' -54.1 NC_003309.1 + 11982 0.66 0.789905
Target:  5'- cGCGGCAG---CCgCGGCGCGcGCcgcgUCGg -3'
miRNA:   3'- -CGCUGUCauaGG-GCCGCGU-CGaa--AGC- -5'
12220 3' -54.1 NC_003309.1 + 43500 0.66 0.779942
Target:  5'- cGCGGCAGUcUCCgCGGUGCgaacggucaAGCcaauccaUUCGg -3'
miRNA:   3'- -CGCUGUCAuAGG-GCCGCG---------UCGa------AAGC- -5'
12220 3' -54.1 NC_003309.1 + 11840 0.66 0.769824
Target:  5'- uCGAUguuGGUucgcgcgCCCGcCGCGGCUUUCGa -3'
miRNA:   3'- cGCUG---UCAua-----GGGCcGCGUCGAAAGC- -5'
12220 3' -54.1 NC_003309.1 + 19362 0.66 0.769824
Target:  5'- gGCGGCGGagugguuuUCCCGGU-CAGCUgcguaUCGa -3'
miRNA:   3'- -CGCUGUCau------AGGGCCGcGUCGAa----AGC- -5'
12220 3' -54.1 NC_003309.1 + 44248 0.66 0.75542
Target:  5'- uCGACAGUcgaaugugcgcccgGUCCCgucugccaaccGGCGaccgcuaCAGCUUUCGg -3'
miRNA:   3'- cGCUGUCA--------------UAGGG-----------CCGC-------GUCGAAAGC- -5'
12220 3' -54.1 NC_003309.1 + 11561 0.66 0.749168
Target:  5'- uCGGCAGcGUCCCG-UGCGGCcacgUUCa -3'
miRNA:   3'- cGCUGUCaUAGGGCcGCGUCGa---AAGc -5'
12220 3' -54.1 NC_003309.1 + 15996 0.69 0.595099
Target:  5'- cGCGAauugGUCCguCGGCGCGGCUgcgagguUUCGg -3'
miRNA:   3'- -CGCUgucaUAGG--GCCGCGUCGA-------AAGC- -5'
12220 3' -54.1 NC_003309.1 + 18652 0.69 0.585181
Target:  5'- gGCGAUcaccUGUCCCGGCGCacaaAGCgucccgUCGa -3'
miRNA:   3'- -CGCUGuc--AUAGGGCCGCG----UCGaa----AGC- -5'
12220 3' -54.1 NC_003309.1 + 38132 0.7 0.545894
Target:  5'- cCGACAgccGUAUCCCGcggcaauugcuccgcGCGCAGUucUUUCGa -3'
miRNA:   3'- cGCUGU---CAUAGGGC---------------CGCGUCG--AAAGC- -5'
12220 3' -54.1 NC_003309.1 + 46083 0.7 0.509595
Target:  5'- gGCGAUAGcAUCCuCGGUGUGGCcgacgUCGa -3'
miRNA:   3'- -CGCUGUCaUAGG-GCCGCGUCGaa---AGC- -5'
12220 3' -54.1 NC_003309.1 + 37628 0.72 0.448236
Target:  5'- uGCGAUAacGUCCCGGC-CGGCUacgUCGg -3'
miRNA:   3'- -CGCUGUcaUAGGGCCGcGUCGAa--AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.