miRNA display CGI


Results 1 - 6 of 6 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12221 3' -46.7 NC_003309.1 + 19046 0.71 0.891689
Target:  5'- cAAUCGUG-AUCGGCcgUUgcugGAUCUGCGc -3'
miRNA:   3'- -UUAGCGCuUAGCUGuaAG----UUAGACGC- -5'
12221 3' -46.7 NC_003309.1 + 19492 0.68 0.961883
Target:  5'- cGUCGCGAuUCGGCGUgCGG-CUGUa -3'
miRNA:   3'- uUAGCGCUuAGCUGUAaGUUaGACGc -5'
12221 3' -46.7 NC_003309.1 + 8200 0.67 0.980954
Target:  5'- cGUCGCGcucaGAUCGACGaacaccaGAUCUGCc -3'
miRNA:   3'- uUAGCGC----UUAGCUGUaag----UUAGACGc -5'
12221 3' -46.7 NC_003309.1 + 24603 0.67 0.978416
Target:  5'- ---aGCGGAUCGACGaugcggcUAAUCUGCu -3'
miRNA:   3'- uuagCGCUUAGCUGUaa-----GUUAGACGc -5'
12221 3' -46.7 NC_003309.1 + 4988 0.66 0.987238
Target:  5'- ---aGCGGcuucCGcGCGUUCGAUCUGCGc -3'
miRNA:   3'- uuagCGCUua--GC-UGUAAGUUAGACGC- -5'
12221 3' -46.7 NC_003309.1 + 2281 0.66 0.987238
Target:  5'- aGAUCGacucgGAAUCGACg--CGAUCgGCGa -3'
miRNA:   3'- -UUAGCg----CUUAGCUGuaaGUUAGaCGC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.