miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12222 3' -59.9 NC_003309.1 + 5063 0.73 0.180962
Target:  5'- gGGCGCGgcGG----CCGGUGCCGcGACg -3'
miRNA:   3'- -CCGCGCuuCCacaaGGCCGCGGC-CUG- -5'
12222 3' -59.9 NC_003309.1 + 15428 0.8 0.059206
Target:  5'- cGCGCGA--GUG-UCCGGCGCCGGAa -3'
miRNA:   3'- cCGCGCUucCACaAGGCCGCGGCCUg -5'
12222 3' -59.9 NC_003309.1 + 18704 0.68 0.386789
Target:  5'- cGGCGCGGAuacGGccgccGaUCCGGCGgCCGGcCu -3'
miRNA:   3'- -CCGCGCUU---CCa----CaAGGCCGC-GGCCuG- -5'
12222 3' -59.9 NC_003309.1 + 19734 0.66 0.479489
Target:  5'- cGGUucGCGAAGGUccGUaCCGaGCGCCGa-- -3'
miRNA:   3'- -CCG--CGCUUCCA--CAaGGC-CGCGGCcug -5'
12222 3' -59.9 NC_003309.1 + 37382 0.66 0.489361
Target:  5'- cGCGUGAgaacgcgcccaAGGUGUUCCagaaguaucGGCG-CGGAg -3'
miRNA:   3'- cCGCGCU-----------UCCACAAGG---------CCGCgGCCUg -5'
12222 3' -59.9 NC_003309.1 + 37602 0.67 0.441028
Target:  5'- cGGUGUGAAGGUGcaacgcuaCGGCGacgaCCGcGGCg -3'
miRNA:   3'- -CCGCGCUUCCACaag-----GCCGC----GGC-CUG- -5'
12222 3' -59.9 NC_003309.1 + 46673 0.69 0.306696
Target:  5'- aGGCGCucAGGUGa-CCGG-GCCGGcGCg -3'
miRNA:   3'- -CCGCGcuUCCACaaGGCCgCGGCC-UG- -5'
12222 3' -59.9 NC_003309.1 + 48036 0.74 0.150059
Target:  5'- cGGCGUGAAGaGUGg-CCGGUcgaggucGCCGGAUg -3'
miRNA:   3'- -CCGCGCUUC-CACaaGGCCG-------CGGCCUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.