miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12223 5' -53.7 NC_003309.1 + 11457 0.66 0.811086
Target:  5'- ----gCACGUagUUCGUCGCCGC-CGu -3'
miRNA:   3'- cuuaaGUGCGa-GAGCAGCGGCGaGCu -5'
12223 5' -53.7 NC_003309.1 + 4145 0.66 0.801468
Target:  5'- ---gUCGCGCUCccgcCGUUGCUGUcgaugUCGAg -3'
miRNA:   3'- cuuaAGUGCGAGa---GCAGCGGCG-----AGCU- -5'
12223 5' -53.7 NC_003309.1 + 44192 0.66 0.771571
Target:  5'- cGGAUUgACGCccgCggcgCGcUGCCGCUCGGc -3'
miRNA:   3'- -CUUAAgUGCGa--Ga---GCaGCGGCGAGCU- -5'
12223 5' -53.7 NC_003309.1 + 31061 0.66 0.771571
Target:  5'- --uUUCGCGC-CUCGUCGCC-CggGGg -3'
miRNA:   3'- cuuAAGUGCGaGAGCAGCGGcGagCU- -5'
12223 5' -53.7 NC_003309.1 + 47692 0.67 0.761295
Target:  5'- --cUUCGC-C-CUCG-CGCUGCUCGAu -3'
miRNA:   3'- cuuAAGUGcGaGAGCaGCGGCGAGCU- -5'
12223 5' -53.7 NC_003309.1 + 8270 0.67 0.761295
Target:  5'- --uUUCGuCGCUCgcgaaUGUCGUCGCgUCGAu -3'
miRNA:   3'- cuuAAGU-GCGAGa----GCAGCGGCG-AGCU- -5'
12223 5' -53.7 NC_003309.1 + 27923 0.67 0.740351
Target:  5'- ----aCGCGCaauugaUC-CGUCGuuGCUCGAg -3'
miRNA:   3'- cuuaaGUGCG------AGaGCAGCggCGAGCU- -5'
12223 5' -53.7 NC_003309.1 + 10925 0.67 0.729705
Target:  5'- ----cCGCGCUUUCaGUCGCCGUcuUCa- -3'
miRNA:   3'- cuuaaGUGCGAGAG-CAGCGGCG--AGcu -5'
12223 5' -53.7 NC_003309.1 + 11722 0.68 0.653047
Target:  5'- -cGUUCGCGCUCuUCGUCcUCGcCUCGu -3'
miRNA:   3'- cuUAAGUGCGAG-AGCAGcGGC-GAGCu -5'
12223 5' -53.7 NC_003309.1 + 12268 0.69 0.619673
Target:  5'- ----gCAgGCUCUUGUCGUCGUcCGAu -3'
miRNA:   3'- cuuaaGUgCGAGAGCAGCGGCGaGCU- -5'
12223 5' -53.7 NC_003309.1 + 15552 0.69 0.604117
Target:  5'- uGAAUUCAaCGUgcaaacccggcugCUCGUCGCUcuucuGCUCGAu -3'
miRNA:   3'- -CUUAAGU-GCGa------------GAGCAGCGG-----CGAGCU- -5'
12223 5' -53.7 NC_003309.1 + 48837 0.7 0.575372
Target:  5'- ---cUgACGCUUcagCGUCGCCGUUCGc -3'
miRNA:   3'- cuuaAgUGCGAGa--GCAGCGGCGAGCu -5'
12223 5' -53.7 NC_003309.1 + 10171 0.7 0.564394
Target:  5'- ---cUCGCGCUCgCGccCGUCGCUUGAu -3'
miRNA:   3'- cuuaAGUGCGAGaGCa-GCGGCGAGCU- -5'
12223 5' -53.7 NC_003309.1 + 22730 0.71 0.521119
Target:  5'- ---cUCGCGCUgaUCGUCGCCGg-CGAc -3'
miRNA:   3'- cuuaAGUGCGAg-AGCAGCGGCgaGCU- -5'
12223 5' -53.7 NC_003309.1 + 41829 0.71 0.483316
Target:  5'- aGAGaUCACGC-CgaccaacggcgcccaUCGUCGCCuGCUCGAu -3'
miRNA:   3'- -CUUaAGUGCGaG---------------AGCAGCGG-CGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.