miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12227 5' -54.9 NC_003309.1 + 7662 0.66 0.690006
Target:  5'- -aGCAcACGau--CGAUCGCGCGCGc -3'
miRNA:   3'- caCGUuUGCcuucGCUAGCGCGCGCa -5'
12227 5' -54.9 NC_003309.1 + 45896 0.67 0.679012
Target:  5'- -aGUuGACGGuucAGC--UCGCGCGCGUu -3'
miRNA:   3'- caCGuUUGCCu--UCGcuAGCGCGCGCA- -5'
12227 5' -54.9 NC_003309.1 + 15916 0.67 0.655789
Target:  5'- -cGCAGcacucgcGCGGAuacucuGCGAgCGCGUGCGc -3'
miRNA:   3'- caCGUU-------UGCCUu-----CGCUaGCGCGCGCa -5'
12227 5' -54.9 NC_003309.1 + 42660 0.67 0.623577
Target:  5'- -aGCGAACGGGccGGCGAUgGCGUccuGuCGUc -3'
miRNA:   3'- caCGUUUGCCU--UCGCUAgCGCG---C-GCA- -5'
12227 5' -54.9 NC_003309.1 + 22598 0.68 0.5793
Target:  5'- cGUGCAGuguCGGAcAGCGA-CGCGCaGCc- -3'
miRNA:   3'- -CACGUUu--GCCU-UCGCUaGCGCG-CGca -5'
12227 5' -54.9 NC_003309.1 + 17773 0.68 0.568319
Target:  5'- -cGCAcACGGAucagccAGcCGuuuuUCGCGCGCGg -3'
miRNA:   3'- caCGUuUGCCU------UC-GCu---AGCGCGCGCa -5'
12227 5' -54.9 NC_003309.1 + 27349 0.69 0.557392
Target:  5'- -cGCccaAAACGGGAGCGG-CGCG-GCGa -3'
miRNA:   3'- caCG---UUUGCCUUCGCUaGCGCgCGCa -5'
12227 5' -54.9 NC_003309.1 + 10723 0.69 0.546526
Target:  5'- -cGCGAGCGcGAGCGAagccUCGgCGCGCu- -3'
miRNA:   3'- caCGUUUGCcUUCGCU----AGC-GCGCGca -5'
12227 5' -54.9 NC_003309.1 + 9714 0.69 0.514366
Target:  5'- -cGuCGAGCGGuuGCcguguGUCGCGCGCGa -3'
miRNA:   3'- caC-GUUUGCCuuCGc----UAGCGCGCGCa -5'
12227 5' -54.9 NC_003309.1 + 4505 0.7 0.452591
Target:  5'- cGUGCucaaaccACGGAAguucGCGAUUGCGuCGCGa -3'
miRNA:   3'- -CACGuu-----UGCCUU----CGCUAGCGC-GCGCa -5'
12227 5' -54.9 NC_003309.1 + 5787 0.72 0.385969
Target:  5'- -cGCAAGCcuucgaGGAAGCGGaaCGUGCGCGg -3'
miRNA:   3'- caCGUUUG------CCUUCGCUa-GCGCGCGCa -5'
12227 5' -54.9 NC_003309.1 + 16771 0.73 0.334262
Target:  5'- -gGCGAACGuGAGGCcgccGUCGCGCGCc- -3'
miRNA:   3'- caCGUUUGC-CUUCGc---UAGCGCGCGca -5'
12227 5' -54.9 NC_003309.1 + 10897 0.74 0.295185
Target:  5'- -cGCc-GCGGucGCGGUCGCcGCGCGUu -3'
miRNA:   3'- caCGuuUGCCuuCGCUAGCG-CGCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.