miRNA: 3'- uAUCUUAUU----GCACGCAC-----UGUCGGGAu -5'
miRNA: 3'- -UAUCUuAUUGCACGCACUg--UCGGGau -5'
miRNA: 3'- -UAUCUuAUUGCACGCACUg--UCGGGau -5'
miRNA: 3'- -UAUCUUAUUGCACGCACUGUCGGGAU- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 1223 | 5' | -50.4 | NC_001266.1 | + | 103155 | 0.66 | 0.99184 |
|
Target: 5'- uUGGAAUGAccguCGUGUGUGuguuuAUGGCCCUu -3' miRNA: 3'- uAUCUUAUU----GCACGCAC-----UGUCGGGAu -5' |
|||||||
| 1223 | 5' | -50.4 | NC_001266.1 | + | 151495 | 0.71 | 0.892984 |
|
Target: 5'- cGUGGAuUAACGUGUGUGAaugGGCCUc- -3' miRNA: 3'- -UAUCUuAUUGCACGCACUg--UCGGGau -5' |
|||||||
| 1223 | 5' | -50.4 | NC_001266.1 | + | 8363 | 0.71 | 0.892984 |
|
Target: 5'- cGUGGAuUAACGUGUGUGAaugGGCCUc- -3' miRNA: 3'- -UAUCUuAUUGCACGCACUg--UCGGGau -5' |
|||||||
| 1223 | 5' | -50.4 | NC_001266.1 | + | 115981 | 1.06 | 0.013161 |
|
Target: 5'- gAUAGAAUAACGUGCGUGACAGCCCUAg -3' miRNA: 3'- -UAUCUUAUUGCACGCACUGUCGGGAU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home