miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12230 3' -55.1 NC_003309.1 + 10946 0.66 0.71548
Target:  5'- cGAGCgcCGUCUGCGcCGUC--GCCGCg -3'
miRNA:   3'- -CUCGaaGCGGAUGUuGUAGccCGGCG- -5'
12230 3' -55.1 NC_003309.1 + 16431 0.66 0.71548
Target:  5'- cAGCacgUCGCCgaccUGCAacgucACGUCGcGGCCGa -3'
miRNA:   3'- cUCGa--AGCGG----AUGU-----UGUAGC-CCGGCg -5'
12230 3' -55.1 NC_003309.1 + 40514 0.66 0.71548
Target:  5'- aGGGUccUGCCgaugcggACGugGUCuGGCCGCg -3'
miRNA:   3'- -CUCGaaGCGGa------UGUugUAGcCCGGCG- -5'
12230 3' -55.1 NC_003309.1 + 32845 0.66 0.704652
Target:  5'- -uGCUUCGCgaGCug---CGGGCCGa -3'
miRNA:   3'- cuCGAAGCGgaUGuuguaGCCCGGCg -5'
12230 3' -55.1 NC_003309.1 + 41888 0.66 0.693752
Target:  5'- aGGCUgcccCGUCUcuccgACGAgAUCGGGCCa- -3'
miRNA:   3'- cUCGAa---GCGGA-----UGUUgUAGCCCGGcg -5'
12230 3' -55.1 NC_003309.1 + 30829 0.66 0.687183
Target:  5'- gGAGCUUcucaacgagaaucgaCGCCgucuggcgcGCAAUGUCGcGCCGCg -3'
miRNA:   3'- -CUCGAA---------------GCGGa--------UGUUGUAGCcCGGCG- -5'
12230 3' -55.1 NC_003309.1 + 27962 0.67 0.660735
Target:  5'- gGAGCUccgcaguugcaUCGCagaUGCGucGCggCGGGCaCGCg -3'
miRNA:   3'- -CUCGA-----------AGCGg--AUGU--UGuaGCCCG-GCG- -5'
12230 3' -55.1 NC_003309.1 + 10415 0.67 0.660735
Target:  5'- cAGCUUCGCCgcaGCAGCAgcUCGaucGCCcuGCg -3'
miRNA:   3'- cUCGAAGCGGa--UGUUGU--AGCc--CGG--CG- -5'
12230 3' -55.1 NC_003309.1 + 48828 0.67 0.627472
Target:  5'- cAGCgUCGCCguucGCGUCaGGCUGCu -3'
miRNA:   3'- cUCGaAGCGGauguUGUAGcCCGGCG- -5'
12230 3' -55.1 NC_003309.1 + 47407 0.68 0.6053
Target:  5'- cGAGCcacgCGUCgacggGCAACAgUCGGGCaGCu -3'
miRNA:   3'- -CUCGaa--GCGGa----UGUUGU-AGCCCGgCG- -5'
12230 3' -55.1 NC_003309.1 + 9315 0.68 0.572241
Target:  5'- --aCUUCGCCaUGC-GCAUCaGGGCgGCu -3'
miRNA:   3'- cucGAAGCGG-AUGuUGUAG-CCCGgCG- -5'
12230 3' -55.1 NC_003309.1 + 32041 0.69 0.518237
Target:  5'- -cGCUUCGCUgGCGGC-UCGG-CCGUg -3'
miRNA:   3'- cuCGAAGCGGaUGUUGuAGCCcGGCG- -5'
12230 3' -55.1 NC_003309.1 + 12939 0.7 0.436571
Target:  5'- cGAGCg-CGCCgACGGCAUCGGagacaCCGCc -3'
miRNA:   3'- -CUCGaaGCGGaUGUUGUAGCCc----GGCG- -5'
12230 3' -55.1 NC_003309.1 + 38830 0.71 0.406962
Target:  5'- cGAGCUuucgggauaauccUCGCCUAUGGCAUCacuaucGGCUGUg -3'
miRNA:   3'- -CUCGA-------------AGCGGAUGUUGUAGc-----CCGGCG- -5'
12230 3' -55.1 NC_003309.1 + 4715 0.73 0.329325
Target:  5'- uGGCUacaUCGucaCCUGCAuguuCAUCGcGGCCGCg -3'
miRNA:   3'- cUCGA---AGC---GGAUGUu---GUAGC-CCGGCG- -5'
12230 3' -55.1 NC_003309.1 + 13463 0.76 0.218493
Target:  5'- uGGGCUUUGCCacacGCAGCGUCGuaucGCCGCc -3'
miRNA:   3'- -CUCGAAGCGGa---UGUUGUAGCc---CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.