miRNA display CGI


Results 1 - 9 of 9 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12230 5' -58 NC_003309.1 + 48809 0.7 0.344623
Target:  5'- aGGCuGCugAACGGCGAauGCGGcuUUCGu -3'
miRNA:   3'- gCCGuCGugUUGCCGCUc-CGCC--AAGU- -5'
12230 5' -58 NC_003309.1 + 37933 0.7 0.336514
Target:  5'- uCGGauaAGCGCGGCcuuucGGCGGGGCGGc--- -3'
miRNA:   3'- -GCCg--UCGUGUUG-----CCGCUCCGCCaagu -5'
12230 5' -58 NC_003309.1 + 26175 0.68 0.4466
Target:  5'- gGGCGGCgGCAACGGCaaaccacccaugcuAGGCGGggaagCAg -3'
miRNA:   3'- gCCGUCG-UGUUGCCGc-------------UCCGCCaa---GU- -5'
12230 5' -58 NC_003309.1 + 5059 0.67 0.48113
Target:  5'- gCGGCGGCcggugccGCGACGGCGGucGGauuCGGgUCAa -3'
miRNA:   3'- -GCCGUCG-------UGUUGCCGCU--CC---GCCaAGU- -5'
12230 5' -58 NC_003309.1 + 45227 0.67 0.462218
Target:  5'- uCGGCGGCACuccAGCGcagaaUGGGGCGGUa-- -3'
miRNA:   3'- -GCCGUCGUG---UUGCc----GCUCCGCCAagu -5'
12230 5' -58 NC_003309.1 + 41690 0.66 0.544158
Target:  5'- cCGGCcGCGCuccGCGuCGAGGUaGGUUCu -3'
miRNA:   3'- -GCCGuCGUGu--UGCcGCUCCG-CCAAGu -5'
12230 5' -58 NC_003309.1 + 36778 0.66 0.544158
Target:  5'- aGaGCGGaCGCu-CGGCGGuGGCGGUUgGg -3'
miRNA:   3'- gC-CGUC-GUGuuGCCGCU-CCGCCAAgU- -5'
12230 5' -58 NC_003309.1 + 19383 0.66 0.544158
Target:  5'- gCGGuCAGCgacacgaccgACGGCGGCGGaGUGGUUUu -3'
miRNA:   3'- -GCC-GUCG----------UGUUGCCGCUcCGCCAAGu -5'
12230 5' -58 NC_003309.1 + 47492 0.66 0.533617
Target:  5'- aGGCGGCGCAGCGacaccuucgccGCcGGGCGuGUcCAc -3'
miRNA:   3'- gCCGUCGUGUUGC-----------CGcUCCGC-CAaGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.